Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.7e-42 175.6 93 100.0
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 1.7e-37 159.1 91 89.0
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.6e-35 152.5 90 86.7
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.3e-34 148.7 90 84.4
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.6e-34 147.1 88 84.1
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 2.5e-33 145.2 88 85.2
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 7.3e-33 143.7 91 79.1
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.1e-31 139.8 88 79.5
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.4e-31 139.4 90 80.0
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.4e-31 139.4 88 79.5
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.2e-30 136.3 85 78.8
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.5e-30 136.0 91 73.6
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 5.8e-30 134.0 87 77.0
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.5e-30 133.7 85 76.5
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.3e-29 132.9 84 76.2
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 1.3e-29 132.9 87 74.7
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 1.3e-29 132.9 87 74.7
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 1.3e-29 132.9 87 74.7
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 1.3e-29 132.9 85 76.5
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.7e-29 132.5 85 76.5
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 1.7e-29 132.5 85 75.3
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.7e-29 132.5 92 71.7
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 2.2e-29 132.1 88 72.7
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 4.9e-29 131.0 84 76.2
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.1e-28 129.8 84 75.0
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.1e-28 129.8 91 69.2
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.9e-28 129.0 83 75.9
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 1.9e-28 129.0 86 72.1
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.4e-28 128.6 85 74.1
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 2.4e-28 128.6 84 72.6
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 3.2e-28 128.3 83 73.5
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 3.2e-28 128.3 91 72.5
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 3.2e-28 128.3 89 74.2
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 4.1e-28 127.9 83 73.5
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 4.1e-28 127.9 90 68.9
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 4.1e-28 127.9 91 67.0
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 4.1e-28 127.9 89 71.9
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 4.1e-28 127.9 85 71.8
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.1e-28 127.9 91 69.2
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 5.4e-28 127.5 89 75.3
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 9.2e-28 126.7 91 69.2
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.2e-27 126.3 89 71.9
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 1.6e-27 125.9 90 70.0
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 2.1e-27 125.6 90 67.8
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 2.1e-27 125.6 89 69.7
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.7e-27 125.2 85 71.8
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 3.5e-27 124.8 85 72.9
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 3.5e-27 124.8 83 71.1
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 7.8e-27 123.6 83 73.5
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 7.8e-27 123.6 83 74.7
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.0e-26 123.2 90 67.8
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.3e-26 122.9 88 68.2
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.3e-26 122.9 85 70.6
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.3e-26 122.9 85 70.6
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 1.3e-26 122.9 83 68.7
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 1.7e-26 122.5 91 62.6
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 3.0e-26 121.7 86 70.9
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 3.0e-26 121.7 86 67.4
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 3.0e-26 121.7 91 63.7
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 5.1e-26 120.9 87 70.1
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 5.1e-26 120.9 89 68.5
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 6.6e-26 120.6 86 64.0
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 6.6e-26 120.6 91 65.9
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 6.6e-26 120.6 84 69.0
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.1e-25 119.8 90 64.4
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 1.1e-25 119.8 88 65.9
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 1.1e-25 119.8 87 67.8
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.5e-25 119.4 84 69.0
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 1.9e-25 119.0 91 62.6
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 2.5e-25 118.6 87 67.8
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 2.5e-25 118.6 91 65.9
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 2.5e-25 118.6 83 67.5
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 4.3e-25 117.9 90 63.3
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 5.6e-25 117.5 83 67.5
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 5.6e-25 117.5 87 67.8
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 1.2e-24 116.3 83 66.3
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 1.6e-24 115.9 85 67.1
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 1.6e-24 115.9 88 65.9
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 1.6e-24 115.9 88 65.9
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 2.8e-24 115.2 91 60.4
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 3.6e-24 114.8 89 60.7
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 3.6e-24 114.8 81 66.7
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 3.6e-24 114.8 89 64.0
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 6.2e-24 114.0 95 65.3
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 6.2e-24 114.0 78 71.8
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 1.1e-23 113.2 82 63.4
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.1e-23 113.2 92 60.9
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.8e-23 112.5 81 70.4
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.3e-23 112.1 85 69.4
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 2.3e-23 112.1 83 66.3
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.2e-22 109.8 85 58.8
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 7.6e-22 107.1 82 67.1
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.3e-21 106.3 76 71.1
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 6.4e-21 104.0 69 69.6
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 1.4e-20 102.8 88 54.5
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.9e-20 102.4 64 79.7
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.4e-20 102.1 68 75.0
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 9.2e-20 100.1 83 56.6
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.2e-19 99.8 83 57.8
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 2.7e-19 98.6 88 53.4
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 4.6e-19 97.8 69 66.7
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 6.0e-19 97.4 85 50.6
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.0e-18 96.7 83 55.4
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.0e-18 96.7 83 55.4
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 3.0e-18 95.1 69 62.3
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 3.9e-18 94.7 83 55.4
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 3.9e-18 94.7 83 53.0
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 5.1e-18 94.4 83 54.2
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 6.6e-18 94.0 83 53.0
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 6.6e-18 94.0 83 53.0
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 1.5e-17 92.8 83 51.8
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.5e-17 92.0 82 51.2
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.5e-17 92.0 82 51.2
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 5.6e-17 90.9 82 51.2
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 7.3e-17 90.5 82 51.2
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 7.3e-17 90.5 82 51.2
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 7.3e-17 90.5 60 75.0
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 9.6e-17 90.1 83 50.6
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 2.1e-16 89.0 85 52.9
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 2.1e-16 89.0 82 50.0
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 2.8e-16 88.6 84 48.8
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 3.6e-16 88.2 82 50.0
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 3.6e-16 88.2 82 51.2
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 3.6e-16 88.2 82 50.0
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 4.7e-16 87.8 82 50.0
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 4.7e-16 87.8 82 50.0
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 1.1e-15 86.7 60 73.3
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.4e-15 86.3 80 53.8
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 1.4e-15 86.3 82 50.0
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 2.4e-15 85.5 73 56.2
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 3.1e-15 85.1 82 47.6
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 4.0e-15 84.7 82 48.8
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 4.0e-15 84.7 82 48.8
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 4.0e-15 84.7 82 48.8
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 4.0e-15 84.7 91 46.2
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 6.8e-15 84.0 87 49.4
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 7.6e-14 80.5 81 53.1
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-13 79.7 73 52.1
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 1.3e-13 79.7 73 52.1
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 1.7e-13 79.3 73 52.1
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 3.8e-13 78.2 73 50.7
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 8.4e-13 77.0 80 46.2
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.1e-11 72.4 65 52.3
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 2.7e-11 72.0 86 46.5
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 3.0e-10 68.6 58 63.8
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 9.6e-09 63.5 83 42.2
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.3e-08 63.2 82 40.2
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 6.2e-08 60.8 95 42.1
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 1.1e-07 60.1 82 42.7
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 2.0e-06 55.8 34 79.4
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 5.8e-06 54.3 36 75.0


User provided reference genes

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