Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 4.0e-28 127.5 69 100.0
MD09G1064600 Malus domestica HOM05D007413 ORTHO05D009357 2.8e-21 104.8 63 82.5
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 1.4e-20 102.4 61 86.9
Cfa007655 Carpinus fangiana HOM05D007413 ORTHO05D009357 1.6e-13 79.0 59 71.2
Manes.02G054200 Manihot esculenta HOM05D007413 ORTHO05D009357 2.8e-13 78.2 57 71.9
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 1.8e-12 75.5 58 67.2
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 1.8e-12 75.5 71 64.8
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 3.1e-12 74.7 60 68.3
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 4.0e-12 74.3 66 65.2
Manes.01G097200 Manihot esculenta HOM05D007413 ORTHO05D009357 4.0e-12 74.3 67 64.2
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 5.3e-12 73.9 59 69.5
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 5.3e-12 73.9 59 69.5
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 6.9e-12 73.6 64 67.2
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 6.9e-12 73.6 64 67.2
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 2.6e-11 71.6 64 57.8
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 3.4e-11 71.2 64 65.6
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 3.4e-11 71.2 69 60.9
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 4.5e-11 70.9 60 55.0
CiPaw.03G089400 Carya illinoinensis HOM05D007413 ORTHO05D009357 5.8e-11 70.5 60 60.0
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 7.6e-11 70.1 58 58.6
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 7.6e-11 70.1 61 65.6
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 9.9e-11 69.7 59 62.7
ClCG07G007410 Citrullus lanatus HOM05D007413 ORTHO05D009357 2.2e-10 68.6 63 58.7
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 2.2e-10 68.6 59 62.7
Psat1g067640 Pisum sativum HOM05D007413 ORTHO05D009357 2.2e-10 68.6 59 59.3
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 2.2e-10 68.6 59 62.7
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 2.2e-10 68.6 59 62.7
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 2.9e-10 68.2 54 63.0
Nn3g17420 Nelumbo nucifera HOM05D007413 ORTHO05D009357 3.8e-10 67.8 61 59.0
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 4.9e-10 67.4 54 63.0
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 6.4e-10 67.0 59 59.3
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 8.4e-10 66.6 60 60.0
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 8.4e-10 66.6 60 58.3
Lalb_Chr21g0318381 Lupinus albus HOM05D007413 ORTHO05D009357 1.1e-09 66.2 60 56.7
Migut.K01283 Erythranthe guttata HOM05D007413 ORTHO05D009357 1.4e-09 65.9 60 55.0
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 1.4e-09 65.9 58 58.6
TWI34G0597 Tripterygium wilfordii HOM05D007413 ORTHO05D009357 1.4e-09 65.9 60 63.3
MELO3C024851.2 Cucumis melo HOM05D007413 ORTHO05D009357 1.9e-09 65.5 63 54.0
Medtr6g015150 Medicago truncatula HOM05D007413 ORTHO05D009357 1.9e-09 65.5 54 61.1
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 1.9e-09 65.5 60 56.7
Aqoxy3G03598 Aquilegia oxysepala HOM05D007413 ORTHO05D009357 2.4e-09 65.1 57 59.6
MELO3C022028.2 Cucumis melo HOM05D007413 ORTHO05D009357 2.4e-09 65.1 57 61.4
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 3.2e-09 64.7 67 52.2
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 4.2e-09 64.3 54 59.3
Sabra17G0082000 Salix brachista HOM05D007413 ORTHO05D009357 4.2e-09 64.3 55 63.6
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 4.2e-09 64.3 62 56.5
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 5.4e-09 63.9 54 63.0
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 7.1e-09 63.5 60 53.3
SalBow1G0329 Salvia bowleyana HOM05D007413 ORTHO05D009357 9.3e-09 63.2 59 59.3
BcaB06g27281 Brassica carinata HOM05D007413 ORTHO05D009357 1.6e-08 62.4 71 49.3
SGA_v2.0_scaffold52G19169 Striga asiatica HOM05D007413 ORTHO05D009357 2.1e-08 62.0 58 56.9
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 2.7e-08 61.6 57 57.9
Nn4g23392 Nelumbo nucifera HOM05D007413 ORTHO05D009357 2.7e-08 61.6 57 57.9
BcaC02g09685 Brassica carinata HOM05D007413 ORTHO05D009357 3.5e-08 61.2 69 47.8
C04p45600 Brassica napus HOM05D007413 ORTHO05D009357 3.5e-08 61.2 69 47.8
BolC4t26142H Brassica oleracea HOM05D007413 ORTHO05D009357 3.5e-08 61.2 69 47.8
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 3.5e-08 61.2 68 50.0
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 3.5e-08 61.2 59 52.5
A04p11950 Brassica napus HOM05D007413 ORTHO05D009357 4.6e-08 60.8 69 46.4
BraA04t16860Z Brassica rapa HOM05D007413 ORTHO05D009357 4.6e-08 60.8 69 46.4
Migut.H00635 Erythranthe guttata HOM05D007413 ORTHO05D009357 4.6e-08 60.8 64 48.4
Actinidia26249 Actinidia chinensis HOM05D007413 ORTHO05D009357 6.0e-08 60.5 56 62.5
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 1.0e-07 59.7 55 56.4
CSS0018963 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 2.3e-07 58.5 56 57.1
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 2.3e-07 58.5 65 53.8
Lalb_Chr02g0158971 Lupinus albus HOM05D007413 ORTHO05D009357 2.3e-07 58.5 52 61.5
Oeu010247.1 Olea europaea HOM05D007413 ORTHO05D009357 2.3e-07 58.5 58 53.4
Carub.0007s3668 Capsella rubella HOM05D007413 ORTHO05D009357 3.0e-07 58.2 52 55.8
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 3.0e-07 58.2 75 48.0
DCAR_011043 Daucus carota HOM05D007413 ORTHO05D009357 5.1e-07 57.4 54 55.6
Solyc02g066970.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 5.1e-07 57.4 65 50.8
Sopen02g016170 Solanum pennellii HOM05D007413 ORTHO05D009357 5.1e-07 57.4 65 52.3
AT5G39240 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 8.7e-07 56.6 73 46.6
CARHR263170 Cardamine hirsuta HOM05D007413 ORTHO05D009357 8.7e-07 56.6 69 49.3
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 1.1e-06 56.2 66 50.0
Sc14g0006230 Simmondsia chinensis HOM05D007413 ORTHO05D009357 1.1e-06 56.2 63 50.8
ATR0064G025 Amborella trichopoda HOM05D007413 ORTHO05D009357 1.5e-06 55.8 54 55.6
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 1.5e-06 55.8 59 47.5
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 1.5e-06 55.8 58 51.7
CAN.G398.10 Capsicum annuum HOM05D007413 ORTHO05D009357 1.5e-06 55.8 52 59.6
AL7G51220 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 1.9e-06 55.5 68 45.6
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 1.9e-06 55.5 60 53.3
Duzib147G0133 Durio zibethinus HOM05D007413 ORTHO05D009357 2.5e-06 55.1 59 49.2
PGSC0003DMG400025144 Solanum tuberosum HOM05D007413 ORTHO05D009357 3.3e-06 54.7 65 49.2
Thhalv10027993m.g Eutrema salsugineum HOM05D007413 ORTHO05D009357 4.3e-06 54.3 70 42.9
Sp7g02750 Schrenkiella parvula HOM05D007413 ORTHO05D009357 5.6e-06 53.9 74 43.2
Sed0019528 Sechium edule HOM05D007413 ORTHO05D009357 5.6e-06 53.9 57 50.9
Aa31LG9G16690 Aethionema arabicum HOM05D007413 ORTHO05D009357 7.4e-06 53.5 60 46.7
Nitab4.5_0005916g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 7.4e-06 53.5 50 62.0
Lsat_1_v5_gn_4_171221 Lactuca sativa HOM05D007413 ORTHO05D009357 9.6e-06 53.1 66 51.5
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 9.6e-06 53.1 57 52.6


User provided reference genes

Program Settings