Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 2.5e-124 448.7 217 100.0
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.5e-108 396.4 217 86.6
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 6.1e-107 391.0 213 85.9
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 1.5e-100 369.8 216 79.6
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 2.7e-99 365.5 216 78.2
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-96 356.7 224 75.4
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.6e-91 339.7 209 77.0
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.6e-89 332.4 216 74.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 5.7e-89 331.3 213 73.2
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.3e-88 330.1 212 73.6
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 3.7e-88 328.6 210 75.2
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 4.9e-88 328.2 210 72.9
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 6.4e-88 327.8 211 73.9
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 8.3e-88 327.4 213 72.3
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.1e-87 327.0 216 73.1
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.1e-87 327.0 192 78.6
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.8e-87 326.2 216 70.8
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.8e-87 326.2 216 70.8
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 1.8e-87 326.2 216 71.3
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 3.2e-87 325.5 215 70.2
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 4.1e-87 325.1 211 72.0
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 4.1e-87 325.1 211 70.6
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 5.4e-87 324.7 210 72.4
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.0e-86 322.8 213 71.4
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.0e-85 320.5 216 69.0
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.0e-85 320.5 216 69.9
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.0e-85 320.5 213 71.4
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.3e-85 320.1 214 70.1
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.3e-85 320.1 216 69.9
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.3e-85 320.1 213 70.9
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.3e-85 319.3 211 71.6
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 2.3e-85 319.3 212 70.8
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 3.0e-85 318.9 211 69.2
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 5.0e-85 318.2 213 69.0
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 8.6e-85 317.4 210 70.5
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 8.6e-85 317.4 211 69.7
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.1e-84 317.0 211 69.2
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.9e-84 316.2 205 71.2
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.9e-84 316.2 212 70.3
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 2.5e-84 315.8 211 69.7
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 2.5e-84 315.8 211 69.2
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 3.3e-84 315.5 207 72.9
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 4.3e-84 315.1 215 68.8
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 9.5e-84 313.9 215 68.4
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.2e-83 313.5 212 68.9
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.2e-83 313.5 212 70.3
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 1.6e-83 313.2 213 70.0
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.8e-83 312.4 215 67.4
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.8e-83 312.4 208 70.2
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 2.8e-83 312.4 215 69.3
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 4.7e-83 311.6 212 70.8
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 8.0e-83 310.8 212 68.4
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 8.0e-83 310.8 212 68.4
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 4.0e-82 308.5 212 68.9
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 4.0e-82 308.5 216 66.2
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 4.0e-82 308.5 211 68.2
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 5.2e-82 308.1 213 68.5
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 5.2e-82 308.1 210 72.4
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 5.2e-82 308.1 216 66.7
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 8.9e-82 307.4 213 67.1
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.2e-81 307.0 212 66.5
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.5e-81 306.6 213 68.5
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.5e-81 306.6 210 68.6
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 2.0e-81 306.2 210 71.9
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 2.6e-81 305.8 210 69.5
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 3.4e-81 305.4 210 67.6
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 7.5e-81 304.3 210 70.5
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.3e-80 303.5 212 67.5
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 6.4e-80 301.2 209 67.5
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.1e-79 300.4 212 65.6
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.9e-79 299.7 211 65.9
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 2.4e-79 299.3 216 65.7
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 3.2e-79 298.9 214 65.4
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 3.2e-79 298.9 214 65.9
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 3.2e-79 298.9 214 65.4
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 7.0e-79 297.7 213 66.2
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.2e-78 297.0 214 64.0
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.2e-78 297.0 216 66.2
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.6e-78 296.6 242 62.4
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 2.7e-78 295.8 216 65.7
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 3.5e-78 295.4 216 66.2
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 4.6e-78 295.0 208 66.8
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 4.6e-78 295.0 209 67.0
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.0e-77 293.9 213 66.7
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.3e-77 293.5 210 65.2
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.3e-77 293.5 209 67.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.7e-77 293.1 216 65.7
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.7e-77 293.1 216 65.7
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 3.0e-77 292.4 217 62.2
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 6.6e-77 291.2 219 65.8
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 6.6e-77 291.2 212 63.7
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.1e-76 290.4 212 64.2
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.9e-76 289.7 210 65.2
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.3e-76 288.5 165 81.2
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.2e-75 287.0 207 66.7
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.2e-73 280.4 212 64.2
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.5e-73 280.0 212 61.3
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.4e-73 278.9 212 61.8
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 5.8e-73 278.1 205 62.4
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 2.9e-72 275.8 216 60.6
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 8.3e-72 274.2 210 58.6
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.2e-71 272.3 190 64.2
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 6.6e-69 264.6 205 63.4
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 2.5e-68 262.7 213 61.5
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 7.3e-68 261.2 209 60.8
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.7e-67 258.5 237 59.1
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 8.1e-67 257.7 196 64.8
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 3.1e-66 255.8 213 60.6
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.5e-65 253.4 206 56.3
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.7e-64 250.0 196 63.3
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 1.1e-63 247.3 202 59.9
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 2.7e-62 242.7 172 67.4
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.0e-62 241.5 213 57.7
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 2.6e-57 226.1 199 56.8
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.6e-57 226.1 212 49.5
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 5.8e-57 224.9 191 59.2
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.4e-55 219.5 141 70.2
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 7.8e-54 214.5 143 67.1
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.5e-52 209.5 170 58.2
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 4.3e-52 208.8 189 52.9
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-51 207.2 163 60.7
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.8e-51 206.1 142 66.2
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 7.6e-49 198.0 209 46.9
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.2e-48 196.4 208 51.4
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.9e-47 193.4 125 70.4
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.2e-46 190.7 127 69.3
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.4e-42 177.2 201 48.8
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.2e-35 151.8 112 65.2
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 5.8e-33 145.2 111 64.9
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 3.7e-27 125.9 209 33.0
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 1.4e-26 124.0 232 34.5
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.1e-26 122.9 138 48.6
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 3.4e-25 119.4 73 67.1
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 5.5e-23 112.1 76 72.4
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 3.9e-21 105.9 113 49.6
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 3.9e-21 105.9 113 49.6
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 8.7e-21 104.8 212 34.9
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.5e-20 104.0 113 48.7
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.3e-20 102.8 72 69.4
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.8e-19 99.8 64 65.6
Cfa022693 Carpinus fangiana HOM05D004605 ORTHO05D005804 9.1e-18 94.7 220 29.5
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 2.0e-17 93.6 221 31.2
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 1.1e-15 87.8 210 30.0
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 6.7e-13 78.6 180 31.1
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 6.7e-13 78.6 44 72.7
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 6.7e-13 78.6 108 42.6
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.6e-12 76.6 84 48.8
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.7e-11 73.9 43 72.1
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 8.2e-11 71.6 203 27.6
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 7.7e-09 65.1 40 70.0
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.4e-07 60.8 221 23.1
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 2.5e-07 60.1 82 41.5
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 7.2e-07 58.5 82 40.2
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-06 57.4 48 54.2


User provided reference genes

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