Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 5.4e-124 447.6 213 100.0
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 2.0e-78 296.2 217 62.2
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 4.5e-78 295.0 216 62.5
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 3.8e-77 292.0 216 61.1
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 5.0e-77 291.6 215 61.9
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 7.9e-75 284.3 217 59.4
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.0e-74 283.9 212 60.4
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.0e-74 283.9 214 60.3
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.0e-74 282.3 224 56.7
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 6.7e-74 281.2 209 59.3
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.1e-73 280.4 210 59.0
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 1.1e-73 280.4 209 58.9
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.9e-73 279.6 210 59.5
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.3e-72 276.9 209 59.8
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-72 276.6 213 58.2
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 1.6e-72 276.6 211 58.3
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 2.2e-72 276.2 213 58.2
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 2.2e-72 276.2 209 59.3
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 2.8e-72 275.8 209 58.4
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 6.3e-72 274.6 213 57.7
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 1.1e-71 273.9 213 58.7
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 3.1e-71 272.3 215 58.6
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 4.1e-71 271.9 209 56.5
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 4.1e-71 271.9 211 58.8
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 5.3e-71 271.6 213 56.3
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 6.9e-71 271.2 213 55.9
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 6.9e-71 271.2 213 55.9
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 6.9e-71 271.2 213 58.2
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 9.0e-71 270.8 210 58.6
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 9.0e-71 270.8 206 57.8
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 9.0e-71 270.8 211 61.1
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.2e-70 270.4 213 57.3
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.0e-70 269.6 213 59.2
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 2.0e-70 269.6 209 56.5
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.4e-70 268.9 204 57.8
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 3.4e-70 268.9 211 55.9
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 3.4e-70 268.9 211 63.0
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 3.4e-70 268.9 207 56.0
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 5.9e-70 268.1 207 56.0
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 7.7e-70 267.7 211 56.9
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 7.7e-70 267.7 207 56.5
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 7.7e-70 267.7 213 55.9
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 7.7e-70 267.7 212 57.1
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.0e-69 267.3 206 55.3
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.0e-69 267.3 213 54.9
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.0e-69 267.3 213 55.4
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 1.7e-69 266.5 211 58.3
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.7e-69 266.5 208 56.2
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 2.2e-69 266.2 209 57.4
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 2.9e-69 265.8 209 57.4
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.9e-69 265.8 209 56.5
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 2.9e-69 265.8 213 58.2
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 3.8e-69 265.4 209 57.9
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.8e-69 265.4 211 55.5
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 3.8e-69 265.4 209 57.9
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 5.0e-69 265.0 213 56.8
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 5.0e-69 265.0 211 56.4
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 5.0e-69 265.0 211 55.0
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.5e-69 264.6 208 55.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 6.5e-69 264.6 213 54.0
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 8.5e-69 264.2 209 56.9
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.5e-69 264.2 190 60.5
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.1e-68 263.8 209 55.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.9e-68 263.1 209 57.4
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.9e-68 263.1 209 57.4
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.9e-68 263.1 209 56.5
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.9e-68 263.1 209 55.0
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.9e-68 263.1 208 56.7
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 4.2e-68 261.9 214 55.6
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.2e-67 260.4 206 54.4
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 1.6e-67 260.0 207 56.5
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 2.7e-67 259.2 213 54.9
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.7e-67 259.2 207 54.6
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 3.6e-67 258.8 206 55.3
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 3.6e-67 258.8 213 54.5
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 4.6e-67 258.5 207 54.1
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.1e-67 258.1 211 61.1
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 6.1e-67 258.1 213 54.5
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.4e-66 256.9 207 54.1
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 2.3e-66 256.1 208 54.8
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.3e-66 256.1 207 54.1
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 2.3e-66 256.1 209 56.0
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 3.0e-66 255.8 207 53.6
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 5.1e-66 255.0 209 53.6
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 8.8e-66 254.2 207 55.6
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.1e-65 253.8 207 53.6
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 2.5e-65 252.7 207 55.1
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 4.3e-65 251.9 207 54.1
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 7.4e-65 251.1 209 55.0
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.7e-64 250.0 206 54.4
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 3.7e-64 248.8 207 54.1
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.8e-64 248.4 208 52.9
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 2.6e-62 242.7 213 53.1
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 5.9e-62 241.5 210 52.4
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.8e-61 238.8 208 49.5
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.1e-60 237.3 208 52.9
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.9e-60 236.5 213 49.3
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 7.2e-60 234.6 210 51.0
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.2e-59 233.8 165 61.2
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.6e-59 233.4 211 51.2
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.1e-59 233.0 235 48.9
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 3.6e-59 232.3 208 51.4
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 2.3e-58 229.6 185 51.9
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 9.7e-57 224.2 198 52.0
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.1e-55 219.2 208 45.7
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 5.3e-55 218.4 206 51.5
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 3.5e-54 215.7 169 55.6
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 7.7e-54 214.5 205 46.3
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 2.2e-53 213.0 205 47.8
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 3.8e-53 212.2 204 47.1
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.5e-52 209.5 206 53.9
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 9.4e-52 207.6 200 48.5
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.2e-51 207.2 163 60.1
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.7e-50 201.4 195 48.7
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.4e-47 193.0 195 47.2
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.3e-47 191.8 237 43.9
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.6e-46 190.3 189 49.7
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 7.7e-46 188.0 208 40.9
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 7.2e-44 181.4 138 52.9
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 6.1e-43 178.3 190 41.1
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.0e-42 176.0 136 55.9
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 4.0e-42 175.6 136 54.4
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 2.6e-41 172.9 208 39.4
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.0e-37 161.0 124 55.6
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.3e-37 160.6 166 44.6
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.5e-36 156.4 199 41.7
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.7e-35 152.1 127 51.2
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.9e-29 132.9 111 54.1
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 2.8e-27 126.3 110 54.5
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 9.8e-25 117.9 208 31.2
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 7.8e-22 108.2 211 33.2
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 3.0e-21 106.3 78 53.8
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.5e-17 94.0 75 60.0
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 7.5e-17 91.7 231 30.3
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.6e-14 84.0 209 26.3
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.7e-14 83.2 58 55.2
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 2.7e-14 83.2 70 54.3
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.6e-14 82.4 143 35.0
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.3e-13 80.9 110 35.5
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.3e-13 80.9 110 35.5
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.3e-13 80.1 209 25.8
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 5.0e-13 79.0 110 34.5
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.2e-10 68.9 41 65.9
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-09 67.8 84 40.5
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.5e-09 67.4 209 24.4
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.6e-09 66.6 40 65.0
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.1e-07 61.2 40 62.5
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 1.9e-07 60.5 82 48.8
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 2.4e-07 60.1 48 56.2
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.1e-07 59.3 79 41.8
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 5.4e-07 58.9 82 47.6


User provided reference genes

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