Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1506.1 792 100.0
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1432.5 793 94.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1406.7 794 93.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1363.6 794 90.4
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1335.1 794 89.3
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1330.5 809 87.6
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1328.5 794 88.8
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1322.8 808 87.5
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1300.4 808 86.0
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1251.9 804 83.1
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1233.4 801 80.3
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1224.5 797 79.9
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1216.1 799 79.3
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1208.7 798 78.9
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1207.2 803 79.3
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1205.7 806 79.7
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1201.0 783 81.5
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1200.7 806 79.0
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1198.3 792 78.5
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1198.0 808 78.5
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1197.2 791 80.3
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1196.8 800 79.1
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1196.4 814 77.8
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1188.7 803 78.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1186.4 814 77.9
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1184.9 799 78.0
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1183.7 807 77.6
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1178.7 802 77.4
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1177.5 797 77.0
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1174.1 867 73.8
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1174.1 802 77.2
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1172.5 803 77.1
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1171.0 803 76.8
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1161.4 798 76.9
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1158.7 754 80.6
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1158.7 800 76.2
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1158.3 845 72.4
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1157.1 798 76.3
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1155.6 800 76.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1154.8 808 76.2
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1153.3 800 76.6
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1152.9 800 76.5
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1152.9 797 77.4
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1152.1 790 77.0
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1145.6 848 73.0
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1142.1 793 75.4
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1137.1 803 74.7
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1133.6 797 75.5
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1132.1 807 73.4
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1131.7 794 74.8
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1126.3 796 75.0
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1121.3 818 73.1
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1119.8 801 74.2
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 901 68.8
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1116.7 783 75.4
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1115.1 795 74.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1107.0 804 74.1
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1105.5 792 74.2
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1102.0 796 74.2
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1100.9 795 73.6
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1099.0 783 74.3
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1097.8 796 72.2
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1095.9 786 74.4
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1093.6 797 73.8
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1092.4 807 73.0
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1091.3 793 74.3
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 811 71.4
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1089.7 802 72.4
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1088.9 808 70.8
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1088.9 802 72.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1087.4 795 71.4
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 793 71.9
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1083.6 808 70.4
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1082.4 821 72.1
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1080.9 787 73.4
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1079.7 765 75.0
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1078.9 809 70.3
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 787 72.6
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 787 72.6
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 785 72.7
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.6e-311 1072.4 785 72.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.6e-311 1072.4 785 72.6
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 2.2e-311 1072.0 789 70.8
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.4e-310 1069.3 796 70.9
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 5.9e-309 1063.9 802 71.4
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.2e-308 1062.0 800 70.2
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 5.5e-307 1057.4 796 71.1
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 4.1e-302 1041.2 646 83.0
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 5.4e-302 1040.8 799 71.7
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.6e-300 1033.9 786 70.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 7.2e-299 1030.4 797 68.0
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.6e-298 1029.2 646 82.5
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.7e-298 1027.7 646 82.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.0e-297 1026.5 803 69.2
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 4.4e-288 994.6 785 67.8
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 4.4e-288 994.6 793 66.6
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 9.2e-286 986.9 799 68.0
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.6e-285 986.1 784 69.0
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 3.5e-285 984.9 801 66.5
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 2.5e-283 978.8 784 68.1
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 8.1e-282 973.8 845 63.8
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.5e-280 969.5 784 68.5
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 3.0e-276 955.3 785 66.4
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 5.6e-275 951.0 779 67.4
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 7.6e-272 940.6 803 62.1
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 7.3e-267 924.1 786 65.9
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 1.1e-259 900.2 815 61.6
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.4e-257 893.3 812 59.5
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.3e-257 891.3 717 69.9
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-252 876.3 803 58.3
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 8.7e-252 874.0 794 60.8
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.3e-228 796.2 650 66.5
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-227 793.5 637 68.0
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.1e-211 740.7 799 51.9
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 6.3e-210 734.9 480 80.0
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.7e-197 693.0 845 48.6
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.7e-197 693.0 845 48.6
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 5.9e-184 648.7 862 45.2
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.6e-183 645.2 839 46.1
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.7e-178 629.4 615 58.2
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 5.8e-171 605.5 459 68.8
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 6.4e-170 602.1 526 62.5
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.9e-169 600.5 650 52.3
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 3.3e-166 589.7 833 43.7
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 5.6e-166 589.0 597 56.4
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.2e-163 581.3 434 70.3
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 6.6e-143 512.3 405 69.9
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-117 428.3 605 46.6
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 4.1e-100 370.2 614 42.8
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 6.3e-85 319.7 212 79.2
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 4.2e-81 307.0 689 36.7
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.3e-77 295.4 766 31.5
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 2.0e-75 288.1 207 72.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.1e-72 278.1 197 72.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-72 277.3 197 72.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-72 277.3 197 72.6
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 7.5e-70 269.6 210 67.1
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.0e-63 249.2 236 59.7
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 5.8e-62 243.4 475 39.6
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 7.5e-62 243.0 121 95.0
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.5e-59 234.2 448 38.8
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 3.9e-50 204.1 131 80.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 2.9e-45 188.0 797 27.5
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.2e-40 170.2 236 45.8
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.0e-38 165.2 87 83.9
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.0e-38 165.2 87 83.9
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.9e-36 158.7 92 80.4
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.5e-33 148.3 360 31.7
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 2.6e-30 138.3 142 52.8
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-29 135.6 130 55.4
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 6.2e-24 117.1 75 82.7
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 6.2e-24 117.1 89 60.7
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 5.4e-20 104.0 74 68.9
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.4e-20 104.0 149 39.6
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.1e-18 97.4 107 50.5
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 6.7e-18 97.1 57 86.0
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 8.7e-18 96.7 71 63.4
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.5e-17 95.1 142 45.1
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.3e-16 92.8 84 56.0
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.4e-15 89.4 75 65.3
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 5.3e-15 87.4 110 51.8
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 7.6e-14 83.6 59 61.0
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 1.4e-12 79.3 77 57.1
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 4.6e-11 74.3 52 78.8
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 6.0e-11 73.9 78 56.4
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.1e-09 69.7 52 75.0
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-09 69.3 65 63.1
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 5.6e-09 67.4 51 72.5
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 2.8e-08 65.1 76 51.3
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 1.8e-07 62.4 74 52.7
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.5e-06 59.3 241 28.2
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 7.6e-06 57.0 122 40.2


User provided reference genes

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