Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 3.0e-267 924.9 553 100.0
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 1.1e-200 703.7 597 77.9
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 7.9e-167 591.3 601 67.1
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 7.9e-167 591.3 601 67.2
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 6.2e-164 581.6 601 67.2
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 9.0e-163 577.8 602 66.6
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 3.4e-162 575.9 598 66.2
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 5.7e-141 505.4 620 56.5
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 4.2e-136 489.2 608 57.1
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 4.6e-135 485.7 557 59.6
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 2.6e-130 469.9 608 52.5
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 1.4e-126 457.6 600 55.8
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 4.4e-125 452.6 612 54.7
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 2.5e-120 436.8 592 54.7
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 1.8e-118 430.6 588 56.5
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 7.0e-115 418.7 594 52.9
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 4.5e-114 416.0 515 59.2
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 7.7e-114 415.2 586 52.6
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 3.0e-110 403.3 614 51.5
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.3e-108 397.9 612 48.0
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 2.9e-105 386.7 526 57.0
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 2.7e-103 380.2 590 51.4
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 3.4e-101 373.2 604 49.5
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 1.1e-99 368.2 532 54.9
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 9.2e-99 365.2 527 56.7
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 1.0e-97 361.7 516 54.1
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 2.9e-97 360.1 530 56.2
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 1.9e-96 357.5 555 51.7
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 3.3e-96 356.7 476 58.8
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 1.2e-95 354.8 476 57.6
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 3.6e-95 353.2 453 57.8
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 8.0e-95 352.1 446 59.4
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 6.8e-94 349.0 357 71.7
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 3.4e-93 346.7 453 57.6
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 7.5e-93 345.5 453 59.4
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 4.9e-92 342.8 500 54.0
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 4.9e-92 342.8 613 49.4
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 8.3e-92 342.0 489 55.4
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 8.3e-92 342.0 459 58.4
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 1.1e-91 341.7 445 58.9
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 1.8e-91 340.9 518 53.5
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 5.4e-91 339.3 439 58.5
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 1.6e-90 337.8 456 56.4
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 1.6e-90 337.8 439 58.3
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 5.0e-89 332.8 500 54.2
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.5e-88 331.3 445 57.1
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 1.9e-88 330.9 465 54.0
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 4.3e-88 329.7 431 60.3
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 2.8e-87 327.0 608 46.7
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 2.8e-87 327.0 510 52.5
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 8.0e-87 325.5 496 53.6
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 5.2e-86 322.8 537 53.3
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 1.5e-85 321.2 463 57.7
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 3.7e-84 316.6 461 56.4
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 3.2e-83 313.5 440 55.2
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 5.4e-83 312.8 458 54.4
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 9.2e-83 312.0 625 46.4
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 3.5e-82 310.1 368 62.8
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 1.0e-81 308.5 446 57.0
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 1.3e-81 308.1 514 49.4
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 3.0e-81 307.0 448 56.7
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 5.0e-81 306.2 512 50.6
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 1.1e-80 305.1 473 56.0
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 1.1e-80 305.1 607 44.8
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 2.8e-79 300.4 534 48.7
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 4.7e-79 299.7 461 56.4
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.4e-78 298.1 463 55.9
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 2.6e-77 293.9 507 52.9
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 5.8e-77 292.7 440 54.5
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 5.8e-77 292.7 445 52.4
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 5.8e-77 292.7 616 45.5
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 8.3e-76 288.9 627 45.9
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 5.4e-75 286.2 504 52.0
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 1.1e-72 278.5 463 54.0
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 1.5e-72 278.1 425 56.5
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 2.5e-72 277.3 501 48.7
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 6.2e-71 272.7 454 52.4
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 8.1e-71 272.3 454 52.4
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 4.4e-69 266.5 357 63.3
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 4.4e-69 266.5 521 47.6
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 4.6e-66 256.5 533 47.3
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 1.1e-64 251.9 454 48.7
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 2.4e-62 244.2 469 51.2
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 3.1e-62 243.8 398 37.9
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 3.1e-62 243.8 398 37.9
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 3.1e-62 243.8 441 46.9
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.3e-60 238.4 441 48.3
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 1.3e-60 238.4 449 51.9
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 2.4e-59 234.2 463 50.1
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 1.7e-57 228.0 535 47.5
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 6.6e-57 226.1 494 48.8
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 8.7e-57 225.7 393 36.6
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 8.7e-57 225.7 393 36.6
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 7.6e-53 212.6 441 31.5
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 3.6e-47 193.7 454 45.2
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 3.6e-47 193.7 454 45.2
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 2.4e-46 191.0 386 48.4
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 1.2e-45 188.7 401 49.9
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 6.4e-44 183.0 317 36.9
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 6.4e-44 183.0 516 42.2
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 2.9e-36 157.5 255 43.5
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 2.5e-32 144.4 229 38.0
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 1.8e-30 138.3 207 38.2
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 3.2e-27 127.5 189 41.3
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 4.1e-14 84.0 111 42.3
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 4.1e-14 84.0 111 42.3
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 5.2e-09 67.0 147 26.5
THA.LOC104812502 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 6.7e-09 66.6 153 27.5
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 1.1e-08 65.9 48 62.5
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 2.0e-08 65.1 160 25.0
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.0e-08 65.1 148 29.1
BcaB05g25293 Brassica carinata HOM05D000891 ORTHO05D000761 4.4e-08 63.9 161 26.1
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 5.7e-08 63.5 145 25.5
THA.LOC104808230 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 9.7e-08 62.8 144 26.4
MSTRG.4712 Avicennia marina HOM05D000891 ORTHO05D000761 2.2e-07 61.6 162 24.1
MSTRG.8965 Avicennia marina HOM05D000891 ORTHO05D000761 2.8e-07 61.2 151 24.5
Atru.chr10.1354 Acer truncatum HOM05D007093 ORTHO05D008910 1.1e-06 59.3 37 67.6
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 1.1e-06 59.3 143 28.0
AagrBONN_evm.TU.Sc2ySwM_228.4557 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.1e-06 57.8 139 30.9
CiPaw.02G077000 Carya illinoinensis HOM05D000855 ORTHO05D008530 3.1e-06 57.8 167 29.9
CiPaw.02G151100 Carya illinoinensis HOM05D006749 ORTHO05D008352 3.1e-06 57.8 139 28.1
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 3.1e-06 57.8 162 27.2
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 4.1e-06 57.4 166 28.9
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 5.3e-06 57.0 166 28.9
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 7.0e-06 56.6 147 26.5
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 7.0e-06 56.6 145 25.5
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 9.1e-06 56.2 145 26.2
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 9.1e-06 56.2 142 24.6


User provided reference genes

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