Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 3.3e-27 124.4 68 100.0
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 4.8e-26 120.6 68 97.1
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 4.8e-26 120.6 68 97.1
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 1.4e-25 119.0 68 95.6
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 1.8e-25 118.6 68 95.6
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 4.1e-25 117.5 68 94.1
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 5.5e-22 107.1 67 88.1
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 2.8e-18 94.7 66 80.3
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 4.8e-18 94.0 64 79.7
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 6.3e-18 93.6 68 75.0
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.1e-17 92.8 62 79.0
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 1.1e-17 92.8 68 79.4
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.4e-17 92.4 68 73.5
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 3.1e-17 91.3 65 76.9
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 3.1e-17 91.3 65 76.9
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 2.7e-16 88.2 68 72.1
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-15 85.9 68 72.1
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 1.7e-15 85.5 66 71.2
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 5.0e-15 84.0 63 77.8
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 6.5e-15 83.6 65 72.3
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 8.5e-15 83.2 68 73.5
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.5e-14 82.4 68 70.6
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 1.5e-14 82.4 66 69.7
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.9e-14 82.0 68 69.1
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 2.5e-14 81.6 64 70.3
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 3.2e-14 81.3 68 69.1
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 5.5e-14 80.5 68 72.1
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 5.5e-14 80.5 66 68.2
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 2.1e-13 78.6 69 68.1
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 2.1e-13 78.6 62 67.7
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 2.7e-13 78.2 68 58.8
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 2.7e-13 78.2 68 58.8
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 4.7e-13 77.4 68 66.2
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 6.1e-13 77.0 66 68.2
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 8.0e-13 76.6 66 68.2
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 8.0e-13 76.6 68 57.4
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 8.0e-13 76.6 68 57.4
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 8.0e-13 76.6 68 57.4
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 1.0e-12 76.3 66 62.1
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 1.0e-12 76.3 67 67.2
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 1.4e-12 75.9 72 63.9
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.8e-12 75.5 68 64.7
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 2.3e-12 75.1 66 60.6
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 2.3e-12 75.1 66 66.7
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 4.0e-12 74.3 68 66.2
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 5.2e-12 73.9 66 65.2
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 6.8e-12 73.6 65 60.0
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 6.8e-12 73.6 66 66.7
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 6.8e-12 73.6 68 64.7
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 6.8e-12 73.6 68 61.8
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 6.8e-12 73.6 66 65.2
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 1.2e-11 72.8 65 60.0
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 1.2e-11 72.8 67 61.2
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 1.2e-11 72.8 67 61.2
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 1.2e-11 72.8 67 61.2
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.2e-11 72.8 68 63.2
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.2e-11 72.8 68 60.3
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.5e-11 72.4 66 62.1
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 1.5e-11 72.4 67 61.2
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.6e-11 71.6 68 63.2
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.6e-11 71.6 68 63.2
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 3.4e-11 71.2 68 63.2
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 3.4e-11 71.2 68 64.7
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.4e-11 71.2 62 58.1
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 3.4e-11 71.2 68 61.8
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 4.4e-11 70.9 67 59.7
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 4.4e-11 70.9 67 59.7
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 4.4e-11 70.9 70 60.0
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 7.5e-11 70.1 61 62.3
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 7.5e-11 70.1 62 64.5
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 9.8e-11 69.7 66 60.6
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 9.8e-11 69.7 64 57.8
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 9.8e-11 69.7 64 57.8
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 9.8e-11 69.7 64 57.8
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 9.8e-11 69.7 64 57.8
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 9.8e-11 69.7 63 63.5
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 9.8e-11 69.7 68 63.2
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 1.3e-10 69.3 66 63.6
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 1.3e-10 69.3 66 62.1
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 1.3e-10 69.3 63 57.1
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 1.3e-10 69.3 68 61.8
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.7e-10 68.9 66 62.1
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 2.8e-10 68.2 65 56.9
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 2.8e-10 68.2 64 56.2
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 2.8e-10 68.2 64 56.2
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 2.8e-10 68.2 64 56.2
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 3.7e-10 67.8 66 60.6
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 3.7e-10 67.8 67 58.2
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 4.8e-10 67.4 66 62.1
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 6.3e-10 67.0 66 62.1
FAN09G3043 Fragaria x ananassa HOM05D002873 ORTHO05D002978 8.3e-10 66.6 66 62.1
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 8.3e-10 66.6 68 64.7
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 1.1e-09 66.2 60 65.0
Phvul.008G022400 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 1.1e-09 66.2 71 57.7
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.1e-09 66.2 65 60.0
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 58.8
Cfa007996 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.8e-09 65.5 68 60.3
Medtr7g018280 Medicago truncatula HOM05D002873 ORTHO05D002978 1.8e-09 65.5 98 45.9
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 4.1e-09 64.3 61 63.9
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 4.1e-09 64.3 66 62.1
Potri.017G108500 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.1e-09 64.3 92 45.7
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 5.4e-09 63.9 70 52.9
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 5.4e-09 63.9 68 57.4
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 7.0e-09 63.5 66 59.1
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 9.1e-09 63.2 68 52.9
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 9.1e-09 63.2 68 54.4
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 1.2e-08 62.8 69 56.5
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 2.0e-08 62.0 68 52.9
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 2.0e-08 62.0 68 52.9
CARHR076460 Cardamine hirsuta HOM05D002873 ORTHO05D002978 2.0e-08 62.0 67 52.2
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 59.1
PSO478G1110 Papaver somniferum HOM05D002873 ORTHO05D002978 2.0e-08 62.0 68 55.9
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 2.0e-08 62.0 68 58.8
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 2.7e-08 61.6 68 58.8
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 2.7e-08 61.6 68 51.5
FvH4_6g45800 Fragaria vesca HOM05D002873 ORTHO05D002978 2.7e-08 61.6 110 42.7
Potri.004G107500 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.7e-08 61.6 68 55.9
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 4.5e-08 60.8 68 51.5
AUR62008938 Chenopodium quinoa HOM05D002873 ORTHO05D002978 5.9e-08 60.5 88 45.5
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 5.9e-08 60.5 68 54.4
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 1.0e-07 59.7 68 51.5
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.0e-07 59.7 65 56.9
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 56.1
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.0e-07 59.7 46 67.4
CSS0045706 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 56.1
CSS0047860 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 56.1
RcHm_v2.0_Chr2g0163981 Rosa chinensis HOM05D002873 ORTHO05D002978 1.3e-07 59.3 105 43.8
Sed0012567 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 60.3
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 50.0
PSO017G1587 Papaver somniferum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 54.4
PSO017G6817 Papaver somniferum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 54.4
Potri.004G107600 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 54.4
FAN09G4276 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.9e-07 58.2 110 41.8
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 2.9e-07 58.2 64 56.2
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 50.0
FvH4_6g45802 Fragaria vesca HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 55.9
FAN05G0873 Fragaria x ananassa HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 55.9
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 3.8e-07 57.8 109 41.3
Sed0026500 Sechium edule HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 55.9
MELO3C022079.2 Cucumis melo HOM05D002873 ORTHO05D002978 5.0e-07 57.4 35 85.7
Ca_20747_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 6.6e-07 57.0 63 57.1
Medtr7g020780 Medicago truncatula HOM05D002873 ORTHO05D002978 6.6e-07 57.0 66 51.5
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 8.6e-07 56.6 66 54.5
BcaC01g04554 Brassica carinata HOM05D002873 ORTHO05D002978 1.1e-06 56.2 67 49.3
Eucgr.J01446 Eucalyptus grandis HOM05D002873 ORTHO05D002978 1.1e-06 56.2 120 37.5
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 54.5
Cfa007988 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.5e-06 55.8 89 41.6
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.5e-06 55.8 66 54.5
FAN09G4825 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.5e-06 55.8 68 54.4
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.5e-06 55.8 60 55.0
Peaxi162Scf00479g00427 Petunia axillaris HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 54.5
Psat3g191840 Pisum sativum HOM05D002873 ORTHO05D002978 2.5e-06 55.1 59 50.8
Sp3g01520 Schrenkiella parvula HOM05D002873 ORTHO05D002978 2.5e-06 55.1 67 49.3
GSVIVG01036482001 Vitis vinifera HOM05D002873 ORTHO05D002978 2.5e-06 55.1 65 50.8
Duzib268G0192 Durio zibethinus HOM05D002873 ORTHO05D002978 3.3e-06 54.7 69 56.5
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 3.3e-06 54.7 66 51.5
CiPaw.03G007000 Carya illinoinensis HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 51.5
Rhsim08G0081300 Rhododendron simsii HOM05D002873 ORTHO05D002978 4.2e-06 54.3 41 70.7
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 53.0
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 7.2e-06 53.5 68 47.1
Hma1.2p1_0588F.1_g184500 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 7.2e-06 53.5 65 50.8
Lalb_Chr06g0174781 Lupinus albus HOM05D002873 ORTHO05D002978 7.2e-06 53.5 65 53.8
Peaxi162Scf00019g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 7.2e-06 53.5 40 70.0
Nitab4.5_0000612g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 9.5e-06 53.1 65 53.8
Sabra04G0074800 Salix brachista HOM05D002873 ORTHO05D002978 9.5e-06 53.1 68 52.9


User provided reference genes

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