Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 2.4e-25 118.2 67 100.0
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.3e-19 97.8 67 79.1
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.3e-19 97.8 67 79.1
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 4.3e-19 97.4 67 82.1
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 6.2e-18 93.6 66 80.3
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.2e-18 93.6 67 77.6
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.1e-17 92.8 67 77.6
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 1.8e-17 92.0 64 81.2
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.8e-17 92.0 67 76.1
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 3.1e-17 91.3 67 77.6
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.1e-17 91.3 70 77.1
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 5.3e-17 90.5 66 77.3
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 5.3e-17 90.5 66 74.2
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 6.9e-17 90.1 70 80.0
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.2e-16 89.4 71 77.5
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.2e-16 89.4 67 74.6
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.0e-16 88.6 65 76.9
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.0e-16 88.6 67 73.1
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.0e-16 88.6 67 76.1
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.6e-16 86.7 67 74.6
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 1.3e-15 85.9 64 73.4
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.7e-15 85.5 65 75.4
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.7e-15 85.5 66 71.2
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 2.9e-15 84.7 64 75.0
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.9e-15 84.7 67 73.1
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 3.8e-15 84.3 65 72.3
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 3.8e-15 84.3 66 75.8
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.8e-15 84.3 65 72.3
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 4.9e-15 84.0 57 82.5
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 4.9e-15 84.0 64 75.0
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 4.9e-15 84.0 66 71.2
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 8.4e-15 83.2 71 77.5
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.4e-15 83.2 64 71.9
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 1.1e-14 82.8 66 71.2
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-14 82.8 68 70.6
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.4e-14 82.4 69 75.4
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.9e-14 82.0 64 73.4
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.2e-14 80.9 60 75.0
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.5e-14 80.5 66 68.2
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.6e-13 79.0 61 72.1
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 1.6e-13 79.0 70 67.1
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.1e-13 78.6 74 62.2
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 2.1e-13 78.6 67 70.1
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 2.7e-13 78.2 74 67.6
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 4.6e-13 77.4 63 69.8
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.0e-13 77.0 74 60.8
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 6.0e-13 77.0 74 60.8
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 7.9e-13 76.6 69 68.1
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.0e-12 76.3 67 62.7
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.0e-12 76.3 67 62.7
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 1.8e-12 75.5 74 66.2
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 2.3e-12 75.1 74 67.6
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 2.3e-12 75.1 74 67.6
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 6.7e-12 73.6 67 59.7
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 1.9e-11 72.0 71 63.4
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 2.5e-11 71.6 58 69.0
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 7.4e-11 70.1 66 63.6
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.4e-11 70.1 69 65.2
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.3e-10 69.3 59 72.9
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.3e-10 69.3 60 63.3
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.6e-10 68.9 62 62.9
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 2.1e-10 68.6 71 64.8
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.8e-10 68.2 60 61.7
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.8e-10 68.2 64 59.4
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.8e-10 68.2 64 59.4
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 2.8e-10 68.2 65 64.6
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 2.8e-10 68.2 60 61.7
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.8e-10 68.2 64 59.4
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 2.8e-10 68.2 59 66.1
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.8e-10 68.2 61 63.9
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.8e-10 68.2 60 61.7
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 3.7e-10 67.8 76 60.5
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 3.7e-10 67.8 58 65.5
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 3.7e-10 67.8 58 65.5
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 3.7e-10 67.8 58 65.5
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 4.8e-10 67.4 60 61.7
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 4.8e-10 67.4 58 63.8
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 6.2e-10 67.0 58 63.8
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.2e-10 67.0 58 65.5
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 8.2e-10 66.6 66 59.1
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 8.2e-10 66.6 58 65.5
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.1e-09 66.2 58 63.8
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.4e-09 65.9 60 66.7
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.8e-09 65.5 61 62.3
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.8e-09 65.5 58 60.3
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.8e-09 65.5 67 58.2
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.8e-09 65.5 54 66.7
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.4e-09 65.1 65 60.0
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 2.4e-09 65.1 58 63.8
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.4e-09 65.1 55 69.1
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 2.4e-09 65.1 58 62.1
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.1e-09 64.7 60 56.7
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 3.1e-09 64.7 58 62.1
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 4.0e-09 64.3 66 60.6
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 4.0e-09 64.3 60 58.3
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.0e-09 64.3 65 58.5
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.3e-09 63.9 60 56.7
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 9.0e-09 63.2 60 58.3
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 9.0e-09 63.2 55 67.3
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 9.0e-09 63.2 61 60.7
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 1.2e-08 62.8 61 59.0
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.2e-08 62.8 59 62.7
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.2e-08 62.8 55 67.3
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.2e-08 62.8 62 58.1
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.5e-08 62.4 61 65.6
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.0e-08 62.0 62 59.7
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.0e-08 62.0 67 56.7
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 2.0e-08 62.0 60 56.7
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.0e-08 62.0 63 58.7
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 2.0e-08 62.0 54 63.0
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 2.6e-08 61.6 69 59.4
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 2.6e-08 61.6 54 63.0
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.6e-08 61.6 63 58.7
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 2.6e-08 61.6 64 59.4
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 2.6e-08 61.6 64 59.4
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 3.4e-08 61.2 55 65.5
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 4.5e-08 60.8 61 57.4
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 5.8e-08 60.5 41 70.7
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 5.8e-08 60.5 57 63.2
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 5.8e-08 60.5 57 63.2
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 7.6e-08 60.1 64 59.4
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 7.6e-08 60.1 59 59.3
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.6e-08 60.1 75 48.0
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.3e-07 59.3 41 68.3
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.7e-07 58.9 64 62.5
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.7e-07 58.9 63 57.1
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.7e-07 58.9 62 56.5
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.7e-07 58.9 62 56.5
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.7e-07 58.9 71 53.5
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.7e-07 58.9 71 53.5
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.2e-07 58.5 65 55.4
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.2e-07 58.5 51 68.6
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.9e-07 58.2 62 54.8
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 2.9e-07 58.2 61 55.7
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 3.8e-07 57.8 41 68.3
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 3.8e-07 57.8 54 66.7
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 4.9e-07 57.4 54 61.1
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 4.9e-07 57.4 41 65.9
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 4.9e-07 57.4 41 65.9
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 4.9e-07 57.4 84 45.2
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 4.9e-07 57.4 56 62.5
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 6.5e-07 57.0 62 56.5
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 6.5e-07 57.0 41 65.9
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 8.4e-07 56.6 62 56.5
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 8.4e-07 56.6 60 56.7
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 8.4e-07 56.6 58 58.6
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.1e-06 56.2 56 60.7
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.9e-06 55.5 60 58.3
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 3.2e-06 54.7 41 63.4
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 3.2e-06 54.7 41 63.4
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 4.2e-06 54.3 63 57.1
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 5.5e-06 53.9 62 54.8
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 5.5e-06 53.9 53 50.9
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 5.5e-06 53.9 66 54.5
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 5.5e-06 53.9 60 61.7
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 5.5e-06 53.9 66 54.5
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 5.5e-06 53.9 60 61.7
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 7.1e-06 53.5 60 60.0
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 7.1e-06 53.5 60 61.7
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 7.1e-06 53.5 60 61.7
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 7.1e-06 53.5 60 61.7
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 7.1e-06 53.5 74 44.6
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 7.1e-06 53.5 55 56.4
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 9.3e-06 53.1 75 44.0
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 9.3e-06 53.1 75 44.0
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 9.3e-06 53.1 62 53.2
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 9.3e-06 53.1 57 56.1


User provided reference genes

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