Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.5e-184 649.4 349 100.0
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.6e-149 533.1 349 83.7
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 2.2e-146 522.7 349 81.9
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.7e-141 505.8 349 78.5
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 4.7e-141 505.0 349 78.5
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 8.8e-132 474.2 352 73.6
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 2.1e-125 453.0 352 70.5
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 8.0e-125 451.1 349 73.1
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 1.0e-124 450.7 352 70.5
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 2.3e-124 449.5 350 70.6
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.7e-122 443.4 352 70.7
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.2e-122 443.0 352 70.7
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 4.1e-121 438.7 351 68.9
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 2.3e-119 433.0 352 69.3
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.5e-118 430.3 349 68.8
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 2.8e-117 426.0 349 66.8
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 4.7e-117 425.2 349 68.8
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 4.0e-116 422.2 350 69.4
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 5.2e-116 421.8 353 68.0
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.2e-115 420.6 351 67.0
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.2e-115 420.6 349 67.0
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.3e-114 417.2 353 67.4
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 4.9e-114 415.2 353 64.9
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 3.2e-113 412.5 352 66.5
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 4.1e-113 412.1 353 64.9
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 4.1e-113 412.1 351 66.4
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.2e-112 410.6 352 67.0
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 3.9e-111 405.6 365 64.1
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 8.6e-111 404.4 362 65.2
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 3.3e-110 402.5 353 62.9
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 3.3e-110 402.5 349 66.8
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.1e-109 399.8 350 66.9
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 3.6e-109 399.1 353 62.0
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 4.7e-109 398.7 357 65.3
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 1.8e-108 396.7 351 63.2
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 2.3e-108 396.4 353 66.3
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 4.0e-108 395.6 360 63.1
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 4.0e-108 395.6 351 64.1
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 5.2e-108 395.2 351 63.8
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.8e-108 394.8 352 63.4
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.8e-108 394.8 352 63.4
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 8.9e-108 394.4 352 63.9
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 8.9e-108 394.4 349 64.5
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.2e-107 394.0 355 64.8
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 2.0e-107 393.3 358 64.2
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.7e-106 390.2 349 65.0
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 2.2e-106 389.8 349 63.6
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 2.4e-105 386.3 419 55.6
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 4.1e-105 385.6 354 61.3
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 7.0e-105 384.8 353 60.3
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.6e-104 383.6 353 60.1
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 2.0e-104 383.3 373 61.9
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 6.0e-104 381.7 349 61.6
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 6.0e-104 381.7 357 62.7
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 7.8e-104 381.3 352 63.4
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.0e-103 380.9 355 61.1
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 2.3e-103 379.8 352 63.4
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.3e-103 379.8 341 64.5
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 3.9e-103 379.0 353 61.8
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.2e-101 374.0 356 61.2
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.6e-101 373.6 355 61.4
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.5e-99 367.1 349 62.8
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 7.5e-99 364.8 352 61.6
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 7.5e-99 364.8 354 59.3
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.3e-98 364.0 352 61.1
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.9e-97 360.1 352 60.8
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 4.1e-97 359.0 352 61.4
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 5.4e-97 358.6 352 61.4
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 5.4e-97 358.6 403 54.1
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 7.1e-97 358.2 352 60.8
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 4.6e-96 355.5 353 60.3
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 1.7e-95 353.6 353 60.1
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 8.6e-95 351.3 352 60.5
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 8.6e-95 351.3 353 60.1
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.1e-94 350.9 352 61.1
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.9e-94 350.1 365 58.9
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 2.5e-94 349.7 352 60.2
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 1.2e-93 347.4 341 58.7
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.8e-93 346.3 352 60.2
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.8e-93 346.3 352 60.2
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 2.8e-93 346.3 346 58.1
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 8.1e-93 344.7 353 57.8
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.4e-92 344.0 352 60.2
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.4e-92 344.0 352 60.2
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 9.9e-91 337.8 341 56.9
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 9.9e-91 337.8 352 59.7
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 9.9e-91 337.8 345 57.7
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 2.2e-90 336.7 374 57.5
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 4.1e-89 332.4 302 63.2
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 5.4e-89 332.0 352 58.5
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.2e-88 330.9 381 53.3
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 2.1e-88 330.1 352 56.8
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.6e-85 320.5 341 58.7
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 4.4e-83 312.4 252 69.0
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 3.2e-81 306.2 358 55.9
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 4.6e-80 302.4 352 55.4
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 5.1e-79 298.9 353 52.1
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 2.6e-75 286.6 201 76.6
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 9.0e-68 261.5 351 49.0
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.2e-64 251.1 234 62.0
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.6e-61 240.7 316 49.4
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 1.5e-59 234.2 333 46.8
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 4.5e-59 232.6 200 67.5
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-58 231.1 143 84.6
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.2e-58 230.3 235 58.3
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 1.4e-57 227.6 203 66.0
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 5.7e-54 215.7 229 56.8
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 2.7e-48 196.8 190 61.1
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 1.7e-42 177.6 301 38.5
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 2.3e-39 167.2 379 37.5
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 6.7e-39 165.6 155 63.2
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.7e-37 161.0 238 42.9
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.0e-35 154.1 235 42.1
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 4.7e-32 142.9 301 37.2
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 6.1e-32 142.5 107 72.9
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 5.2e-31 139.4 96 72.9
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 5.7e-30 136.0 231 44.2
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 4.8e-29 132.9 229 42.4
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 1.2e-24 118.2 374 29.4
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 5.2e-23 112.8 70 84.3
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 5.7e-22 109.4 302 36.1
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 5.3e-20 102.8 325 32.6
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 9.1e-20 102.1 102 60.8
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 1.6e-19 101.3 94 59.6
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 2.9e-18 97.1 84 65.5
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 2.5e-17 94.0 77 68.8
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 4.0e-15 86.7 241 35.7
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 1.3e-13 81.6 86 59.3
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 4.1e-12 76.6 97 45.4
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 9.1e-12 75.5 138 42.8
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 1.6e-11 74.7 123 43.9
MD11G1231800 Malus domestica HOM05D005714 ORTHO05D006812 2.5e-09 67.4 48 72.9
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 7.2e-09 65.9 46 73.9
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 8.0e-08 62.4 52 65.4
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.0e-07 62.0 101 44.6
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 1.0e-07 62.0 128 43.0


User provided reference genes

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