Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.3e-125 452.2 221 100.0
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.4e-71 273.5 142 93.7
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.6e-70 270.0 142 92.3
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.2e-62 243.8 142 83.8
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.4e-61 240.4 142 78.9
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.4e-61 240.4 142 82.4
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 3.0e-61 239.2 140 80.0
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 3.0e-61 239.2 142 80.3
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 4.0e-61 238.8 142 78.9
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 4.0e-61 238.8 142 78.2
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 5.2e-61 238.4 154 76.6
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 5.2e-61 238.4 141 78.7
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 6.7e-61 238.0 142 80.3
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.5e-60 236.9 142 81.0
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 2.0e-60 236.5 142 78.9
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 2.0e-60 236.5 142 78.9
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 2.0e-60 236.5 142 79.6
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 2.0e-60 236.5 142 78.9
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.6e-60 236.1 142 81.0
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 3.3e-60 235.7 142 80.3
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 7.5e-60 234.6 142 80.3
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.3e-59 233.8 140 76.4
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.7e-59 233.4 142 78.2
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.7e-59 233.4 142 76.1
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.8e-59 232.6 142 76.8
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.8e-59 232.6 140 76.4
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 3.7e-59 232.3 140 76.4
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.8e-59 231.9 142 76.1
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 8.2e-59 231.1 142 75.4
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-58 230.7 142 75.4
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 1.1e-58 230.7 142 75.4
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.1e-58 230.7 142 76.1
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.1e-58 230.7 142 76.8
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.1e-58 230.7 142 76.1
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.4e-58 230.3 142 74.6
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.4e-58 230.3 142 74.6
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 1.8e-58 229.9 142 75.4
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 1.8e-58 229.9 142 75.4
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.8e-58 229.9 142 76.1
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.8e-58 229.9 142 77.5
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.8e-58 229.9 142 77.5
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 2.4e-58 229.6 142 73.9
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 2.4e-58 229.6 142 73.9
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 2.4e-58 229.6 142 74.6
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 3.1e-58 229.2 142 74.6
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 5.3e-58 228.4 142 75.4
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 7.0e-58 228.0 142 74.6
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 7.0e-58 228.0 141 74.5
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 9.1e-58 227.6 144 74.3
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 9.1e-58 227.6 142 74.6
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 9.1e-58 227.6 142 74.6
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 9.1e-58 227.6 142 74.6
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 9.1e-58 227.6 142 76.1
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 1.2e-57 227.3 142 73.9
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.2e-57 227.3 141 78.0
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.2e-57 227.3 142 76.1
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.2e-57 227.3 142 76.1
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 2.0e-57 226.5 141 77.3
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.0e-57 226.5 146 71.2
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 2.7e-57 226.1 141 78.7
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 2.7e-57 226.1 137 75.9
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.5e-57 225.3 142 74.6
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 4.5e-57 225.3 142 73.9
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 4.5e-57 225.3 142 73.9
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 4.5e-57 225.3 142 72.5
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 7.7e-57 224.6 142 71.8
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 7.7e-57 224.6 142 73.2
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 7.7e-57 224.6 141 74.5
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.0e-56 224.2 142 73.2
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.3e-56 223.8 139 78.4
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 2.2e-56 223.0 142 73.2
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 2.2e-56 223.0 142 73.2
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.2e-56 223.0 142 72.5
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 5.0e-56 221.9 142 71.8
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 6.5e-56 221.5 141 75.2
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 6.5e-56 221.5 142 72.5
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 8.5e-56 221.1 142 72.5
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.5e-55 220.3 142 71.1
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.5e-55 219.5 142 71.1
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.5e-55 219.5 142 73.2
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.5e-55 219.5 142 72.5
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.2e-55 218.8 141 75.9
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.6e-54 216.9 142 71.8
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.1e-54 216.5 142 72.5
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.1e-54 216.5 143 72.0
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 2.7e-54 216.1 141 73.0
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.7e-54 215.3 138 74.6
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.0e-53 214.2 142 74.6
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.4e-53 213.8 139 75.5
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.0e-53 212.6 138 73.2
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.0e-53 212.6 170 62.4
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.0e-53 212.2 147 70.1
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 4.0e-53 212.2 142 69.0
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 5.2e-53 211.8 145 71.0
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 6.8e-53 211.5 138 72.5
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 6.8e-53 211.5 142 70.4
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 8.8e-53 211.1 134 75.4
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 2.0e-52 209.9 193 58.5
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 2.0e-52 209.9 193 58.5
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 7.5e-52 208.0 142 69.0
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.3e-51 207.2 142 69.0
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 1.3e-51 207.2 142 67.6
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.7e-51 206.8 141 70.9
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 2.2e-51 206.5 138 69.6
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 3.7e-51 205.7 141 70.2
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.8e-51 205.3 141 70.2
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.8e-51 205.3 141 70.2
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 6.3e-51 204.9 143 68.5
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.3e-51 204.5 141 69.5
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 5.4e-50 201.8 141 70.9
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 7.0e-50 201.4 142 68.3
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 9.1e-50 201.1 163 63.2
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.2e-49 200.7 122 77.0
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.2e-49 200.7 142 66.9
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 1.2e-49 200.7 138 68.1
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 2.0e-49 199.9 191 53.9
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.0e-49 199.9 140 69.3
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 2.7e-49 199.5 141 70.9
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 3.5e-49 199.1 142 69.0
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 5.9e-49 198.4 141 68.8
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 5.9e-49 198.4 140 67.9
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 7.7e-49 198.0 140 68.6
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 7.7e-49 198.0 140 66.4
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.3e-48 197.2 135 69.6
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 2.2e-48 196.4 135 69.6
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.9e-48 196.1 142 69.0
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 6.5e-48 194.9 140 67.1
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 8.5e-48 194.5 140 67.1
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.1e-47 194.1 142 64.1
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.5e-47 193.7 135 67.4
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.9e-47 193.4 137 66.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 2.5e-47 193.0 140 67.1
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.6e-46 190.3 142 66.9
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.6e-46 189.1 142 62.7
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.8e-45 186.8 142 66.2
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.5e-44 183.7 140 66.4
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 3.4e-44 182.6 145 61.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.7e-43 179.1 175 53.7
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 1.1e-42 177.6 143 64.3
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 2.4e-42 176.4 108 75.9
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 5.4e-42 175.3 142 60.6
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 5.4e-42 175.3 138 60.9
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.2e-38 164.1 136 58.8
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.6e-38 163.7 136 58.1
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 5.2e-37 158.7 141 57.4
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.7e-35 152.5 138 56.5
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 8.3e-35 151.4 140 52.9
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 2.4e-34 149.8 142 52.8
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.1e-34 149.1 142 56.3
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 1.2e-33 147.5 126 58.7
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.6e-33 147.1 125 56.8
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 4.6e-33 145.6 289 35.3
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.3e-31 139.4 129 53.5
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.3e-31 139.0 129 53.5
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 2.0e-25 120.2 126 47.6
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 1.3e-24 117.5 80 65.0
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.1e-23 114.4 73 71.2
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 1.1e-23 114.4 81 63.0
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 4.0e-21 105.9 68 76.5
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.2e-20 104.4 67 70.1
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 5.8e-20 102.1 68 73.5
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 7.5e-20 101.7 115 48.7
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.5e-20 101.7 110 51.8
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.5e-20 101.7 110 51.8
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.5e-20 101.7 110 51.8
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 4.9e-19 99.0 117 43.6
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 1.4e-18 97.4 95 51.6
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 7.1e-18 95.1 121 44.6
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.6e-17 94.0 87 56.3
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 3.5e-17 92.8 121 45.5
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 3.5e-17 92.8 67 65.7
Prupe.5G161800 Prunus persica HOM05D003749 ORTHO05D004421 1.7e-16 90.5 51 80.4
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 3.0e-16 89.7 59 69.5
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 3.0e-16 89.7 59 69.5
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.5e-15 86.7 77 53.2
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 3.6e-14 82.8 124 42.7
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 9.9e-12 74.7 42 83.3
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.9e-10 70.5 39 84.6
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 1.9e-10 70.5 42 78.6
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 2.1e-09 67.0 40 70.0
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 2.7e-09 66.6 121 38.0
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.1e-07 61.2 35 80.0
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.5e-07 60.8 37 75.7
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 1.6e-06 57.4 34 73.5
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 3.6e-06 56.2 34 70.6
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 4.7e-06 55.8 71 45.1


User provided reference genes

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