Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G240100 Prunus persica HOM05D004326 ORTHO05D004570 7.2e-22 106.3 52 100.0
MD09G1083800 Malus domestica HOM05D004326 ORTHO05D004570 8.5e-15 82.8 52 75.0
PGR042G3431 Punica granatum HOM05D004326 ORTHO05D004570 9.4e-14 79.3 53 73.6
Gohir.A07G168701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.8e-12 75.1 52 67.3
Gohir.D07G179500 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.8e-12 75.1 52 67.3
Gorai.001G200500 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.8e-12 75.1 52 67.3
CANSAT64G0444 Cannabis sativa HOM05D004326 ORTHO05D004570 2.3e-12 74.7 54 70.4
Thecc.04G138400 Theobroma cacao HOM05D004326 ORTHO05D004570 2.3e-12 74.7 52 67.3
Duzib138G0964 Durio zibethinus HOM05D004326 ORTHO05D004570 4.0e-12 73.9 52 67.3
Glyma.08G256500 Glycine max HOM05D004326 ORTHO05D004570 4.0e-12 73.9 45 73.3
Potri.017G112100 Populus trichocarpa HOM05D004326 ORTHO05D004570 5.2e-12 73.6 45 71.1
Phvul.008G020301 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 6.8e-12 73.2 45 73.3
Potri.004G102950 Populus trichocarpa HOM05D004326 ORTHO05D004570 6.8e-12 73.2 52 71.2
CiPaw.03G059200 Carya illinoinensis HOM05D004326 ORTHO05D004570 5.7e-11 70.1 45 68.9
Glyma.18G280800 Glycine max HOM05D004326 ORTHO05D004570 7.5e-11 69.7 45 68.9
FvH4_6g45391 Fragaria vesca HOM05D004326 ORTHO05D004570 9.8e-11 69.3 35 88.6
FAN14G2544 Fragaria x ananassa HOM05D004326 ORTHO05D004570 9.8e-11 69.3 35 88.6
FAN14G3188 Fragaria x ananassa HOM05D004326 ORTHO05D004570 9.8e-11 69.3 35 88.6
RcHm_v2.0_Chr2g0163211 Rosa chinensis HOM05D004326 ORTHO05D004570 9.8e-11 69.3 47 72.3
TWI56G0546 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.2e-10 68.2 45 66.7
Lalb_Chr17g0336511 Lupinus albus HOM05D004326 ORTHO05D004570 2.8e-10 67.8 45 66.7
Manes.01G107900 Manihot esculenta HOM05D004326 ORTHO05D004570 2.8e-10 67.8 52 65.4
Manes.02G066501 Manihot esculenta HOM05D004326 ORTHO05D004570 2.8e-10 67.8 52 59.6
TWI12G0968 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.8e-10 67.8 52 65.4
C03p08740 Brassica napus HOM05D004326 ORTHO05D004570 4.8e-10 67.0 45 64.4
BolC3t13372H Brassica oleracea HOM05D004326 ORTHO05D004570 4.8e-10 67.0 45 64.4
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 1.4e-09 65.5 45 62.2
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 1.4e-09 65.5 45 62.2
CAN.G93.32 Capsicum annuum HOM05D004326 ORTHO05D004570 1.8e-09 65.1 52 57.7
Migut.L01097 Erythranthe guttata HOM05D004326 ORTHO05D004570 3.1e-09 64.3 52 59.6
Carub.0006s1421 Capsella rubella HOM05D004326 ORTHO05D004570 4.1e-09 63.9 52 53.8
Glyma.02G099000 Glycine max HOM05D004326 ORTHO05D004570 4.1e-09 63.9 44 68.2
THA.LOC109117071 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 7.0e-09 63.2 37 73.0
Thecc.02G361000 Theobroma cacao HOM05D004326 ORTHO05D004570 7.0e-09 63.2 52 61.5
Duzib251G0285 Durio zibethinus HOM05D004326 ORTHO05D004570 1.2e-08 62.4 52 59.6
Solyc02g065570.1 Solanum lycopersicum HOM05D004326 ORTHO05D004570 1.2e-08 62.4 52 55.8
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 1.6e-08 62.0 52 53.8
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 1.6e-08 62.0 52 53.8
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 1.6e-08 62.0 52 53.8
Duzib268G0802 Durio zibethinus HOM05D004326 ORTHO05D004570 1.6e-08 62.0 52 59.6
Thhalv10015386m.g Eutrema salsugineum HOM05D004326 ORTHO05D004570 1.6e-08 62.0 40 70.0
Potri.010G129600 Populus trichocarpa HOM05D004326 ORTHO05D004570 1.6e-08 62.0 52 63.5
AT1G67265 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 2.0e-08 61.6 30 83.3
Carub.0002s1354 Capsella rubella HOM05D004326 ORTHO05D004570 2.0e-08 61.6 30 83.3
Potri.008G116700 Populus trichocarpa HOM05D004326 ORTHO05D004570 2.0e-08 61.6 52 63.5
Gohir.D13G069701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.7e-08 61.2 52 57.7
PSO478G3685 Papaver somniferum HOM05D004326 ORTHO05D004570 2.7e-08 61.2 52 61.5
THA.LOC104805244 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 2.7e-08 61.2 52 59.6
THA.LOC104825713 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 2.7e-08 61.2 52 59.6
Migut.H00527 Erythranthe guttata HOM05D004326 ORTHO05D004570 3.5e-08 60.8 45 60.0
Migut.K00857 Erythranthe guttata HOM05D004326 ORTHO05D004570 3.5e-08 60.8 34 76.5
Glyma.20G185900 Glycine max HOM05D004326 ORTHO05D004570 3.5e-08 60.8 52 59.6
Gohir.A13G053100 Gossypium hirsutum HOM05D004326 ORTHO05D004570 3.5e-08 60.8 52 57.7
Gohir.D12G173600 Gossypium hirsutum HOM05D004326 ORTHO05D004570 3.5e-08 60.8 49 63.3
CiPaw.15G003600 Carya illinoinensis HOM05D004326 ORTHO05D004570 4.5e-08 60.5 52 57.7
Glyma.01G088000 Glycine max HOM05D004326 ORTHO05D004570 4.5e-08 60.5 52 59.6
Glyma.02G100100 Glycine max HOM05D004326 ORTHO05D004570 4.5e-08 60.5 52 59.6
TWI79G1601 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 4.5e-08 60.5 52 61.5
Manes.14G097600 Manihot esculenta HOM05D004326 ORTHO05D004570 5.9e-08 60.1 52 57.7
PSO063G2411 Papaver somniferum HOM05D004326 ORTHO05D004570 5.9e-08 60.1 45 66.7
PSO782G5714 Papaver somniferum HOM05D004326 ORTHO05D004570 5.9e-08 60.1 45 66.7
Phvul.007G102250 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 5.9e-08 60.1 52 59.6
ClCG05G012040 Citrullus lanatus HOM05D004326 ORTHO05D004570 7.7e-08 59.7 28 89.3
PSO017G5195 Papaver somniferum HOM05D004326 ORTHO05D004570 7.7e-08 59.7 51 58.8
THA.LOC109116985 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 7.7e-08 59.7 30 86.7
C06p43000 Brassica napus HOM05D004326 ORTHO05D004570 1.0e-07 59.3 35 74.3
BolC6t39135H Brassica oleracea HOM05D004326 ORTHO05D004570 1.0e-07 59.3 35 74.3
BraA07t31013Z Brassica rapa HOM05D004326 ORTHO05D004570 1.0e-07 59.3 30 83.3
CANSAT64G1998 Cannabis sativa HOM05D004326 ORTHO05D004570 1.0e-07 59.3 52 63.5
Glyma.10G204600 Glycine max HOM05D004326 ORTHO05D004570 1.0e-07 59.3 52 57.7
Gorai.008G186200 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.0e-07 59.3 52 61.5
MD16G1048200 Malus domestica HOM05D004326 ORTHO05D004570 1.0e-07 59.3 52 59.6
PGR119G2456 Punica granatum HOM05D004326 ORTHO05D004570 1.0e-07 59.3 46 63.0
AL6G26900 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 1.3e-07 58.9 52 53.8
Migut.K01265 Erythranthe guttata HOM05D004326 ORTHO05D004570 1.3e-07 58.9 52 59.6
Gohir.A12G170400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.3e-07 58.9 52 59.6
CARHR197290 Cardamine hirsuta HOM05D004326 ORTHO05D004570 1.7e-07 58.5 52 53.8
MD13G1046500 Malus domestica HOM05D004326 ORTHO05D004570 1.7e-07 58.5 52 59.6
THA.LOC109116378 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.7e-07 58.5 38 76.3
AT5G16023 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 2.2e-07 58.2 52 51.9
CAN.G184.91 Capsicum annuum HOM05D004326 ORTHO05D004570 2.2e-07 58.2 52 59.6
Lalb_Chr06g0170221 Lupinus albus HOM05D004326 ORTHO05D004570 2.2e-07 58.2 52 55.8
TWI31G0110 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.2e-07 58.2 52 59.6
Atru.chr11.1355 Acer truncatum HOM05D004326 ORTHO05D004570 2.9e-07 57.8 51 56.9
BolC2t06734H Brassica oleracea HOM05D004326 ORTHO05D004570 2.9e-07 57.8 52 55.8
THA.LOC109117262 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 3.8e-07 57.4 30 80.0
CAN.G497.3 Capsicum annuum HOM05D004326 ORTHO05D004570 5.0e-07 57.0 52 51.9
Oeu058414.1 Olea europaea HOM05D004326 ORTHO05D004570 5.0e-07 57.0 49 53.1
Sed0007261 Sechium edule HOM05D004326 ORTHO05D004570 5.0e-07 57.0 51 51.0
C02p08120 Brassica napus HOM05D004326 ORTHO05D004570 6.5e-07 56.6 52 53.8
Eucgr.G02348 Eucalyptus grandis HOM05D004326 ORTHO05D004570 8.5e-07 56.2 45 60.0
Lalb_Chr02g0151761 Lupinus albus HOM05D004326 ORTHO05D004570 8.5e-07 56.2 51 51.0
Glyma.10G129200 Glycine max HOM05D004326 ORTHO05D004570 1.1e-06 55.8 52 57.7
A02p03350 Brassica napus HOM05D004326 ORTHO05D004570 1.5e-06 55.5 45 57.8
BraA02t05306Z Brassica rapa HOM05D004326 ORTHO05D004570 1.5e-06 55.5 45 57.8
Gohir.A09G046900 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.5e-06 55.5 52 51.9
Gohir.D09G047400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.5e-06 55.5 52 51.9
Gorai.006G062700 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.5e-06 55.5 52 51.9
Prupe.1G305400 Prunus persica HOM05D004326 ORTHO05D004570 1.5e-06 55.5 52 57.7
AL1G24940 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 1.9e-06 55.1 34 70.6
AT1G13245 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.9e-06 55.1 34 70.6
Carub.0001s1297 Capsella rubella HOM05D004326 ORTHO05D004570 1.9e-06 55.1 34 70.6
Lalb_Chr17g0341881 Lupinus albus HOM05D004326 ORTHO05D004570 1.9e-06 55.1 52 53.8
Manes.06G072200 Manihot esculenta HOM05D004326 ORTHO05D004570 1.9e-06 55.1 52 51.9
PGR083G2212 Punica granatum HOM05D004326 ORTHO05D004570 1.9e-06 55.1 50 54.0
PGR102G0365 Punica granatum HOM05D004326 ORTHO05D004570 1.9e-06 55.1 32 78.1
MELO3C008521.2 Cucumis melo HOM05D004326 ORTHO05D004570 2.5e-06 54.7 44 56.8
AL2G27790 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 3.2e-06 54.3 30 76.7
AT1G68825 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 3.2e-06 54.3 30 76.7
AT3G02493 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 3.2e-06 54.3 46 63.0
C06p37300 Brassica napus HOM05D004326 ORTHO05D004570 3.2e-06 54.3 30 76.7
Carub.0002s1541 Capsella rubella HOM05D004326 ORTHO05D004570 3.2e-06 54.3 30 76.7
CiPaw.15G127400 Carya illinoinensis HOM05D004326 ORTHO05D004570 3.2e-06 54.3 52 44.2
Manes.05G139100 Manihot esculenta HOM05D004326 ORTHO05D004570 3.2e-06 54.3 35 68.6
PSO063G2252 Papaver somniferum HOM05D004326 ORTHO05D004570 3.2e-06 54.3 35 74.3
Prupe.5G217900 Prunus persica HOM05D004326 ORTHO05D004570 3.2e-06 54.3 52 50.0
CARHR013620 Cardamine hirsuta HOM05D004326 ORTHO05D004570 4.2e-06 53.9 34 67.6
Lalb_Chr10g0099751 Lupinus albus HOM05D004326 ORTHO05D004570 4.2e-06 53.9 52 55.8
BolC5t29757H Brassica oleracea HOM05D004326 ORTHO05D004570 5.5e-06 53.5 34 70.6
BraA06t24046Z Brassica rapa HOM05D004326 ORTHO05D004570 5.5e-06 53.5 34 70.6
BraA08t35162Z Brassica rapa HOM05D004326 ORTHO05D004570 5.5e-06 53.5 34 70.6
Duzib084G0446 Durio zibethinus HOM05D004326 ORTHO05D004570 5.5e-06 53.5 53 52.8
THA.LOC109116167 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.5e-06 53.5 52 48.1
A08p32390 Brassica napus HOM05D004326 ORTHO05D004570 9.5e-06 52.8 46 60.9
BolC8t49226H Brassica oleracea HOM05D004326 ORTHO05D004570 9.5e-06 52.8 34 70.6
Duzib068G0156 Durio zibethinus HOM05D004326 ORTHO05D004570 9.5e-06 52.8 27 74.1
TWI60G1416 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 9.5e-06 52.8 53 54.7


User provided reference genes

Program Settings