Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 1.6e-158 562.8 300 100.0
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 8.1e-126 454.1 303 81.5
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 2.6e-124 449.1 303 80.2
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 1.2e-108 397.1 296 72.0
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.6e-108 396.0 296 72.0
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 1.3e-107 393.7 294 71.8
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.9e-107 392.5 296 71.6
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.2e-105 387.1 296 70.6
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 3.7e-102 375.6 275 73.8
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 4.5e-100 368.6 297 68.7
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.7e-99 366.7 291 68.4
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 2.9e-99 365.9 212 85.4
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.9e-98 363.2 212 87.7
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.9e-98 363.2 309 66.7
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 2.1e-97 359.8 239 79.9
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 2.7e-97 359.4 286 68.5
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 1.4e-96 357.1 289 68.5
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 2.3e-96 356.3 233 80.7
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 3.0e-96 355.9 220 82.3
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 8.8e-96 354.4 245 78.4
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.1e-95 354.0 287 67.9
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 3.3e-95 352.4 286 68.2
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 5.7e-95 351.7 220 80.9
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 2.2e-94 349.7 250 73.6
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 2.2e-94 349.7 230 79.1
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 2.8e-94 349.4 246 74.8
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 2.8e-94 349.4 215 80.9
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 6.3e-94 348.2 287 67.2
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 8.2e-94 347.8 213 83.1
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.8e-93 346.7 310 63.5
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 2.4e-93 346.3 207 85.5
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 4.1e-93 345.5 214 79.9
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 5.3e-93 345.1 214 80.4
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.5e-92 343.6 229 78.6
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 1.5e-92 343.6 229 78.6
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 1.5e-92 343.6 229 78.6
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 1.5e-92 343.6 244 74.2
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 1.5e-92 343.6 214 79.9
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 2.0e-92 343.2 239 77.8
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 2.0e-92 343.2 244 73.8
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 2.6e-92 342.8 219 80.4
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.6e-92 342.8 218 80.7
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 3.4e-92 342.4 220 80.9
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 4.5e-92 342.0 231 76.6
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 5.9e-92 341.7 252 73.4
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 5.9e-92 341.7 252 73.4
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 1.0e-91 340.9 212 81.6
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 1.0e-91 340.9 220 81.4
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.3e-91 340.5 229 78.2
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 1.3e-91 340.5 229 78.2
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.3e-91 340.5 216 81.5
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.7e-91 340.1 216 81.5
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 2.2e-91 339.7 274 68.2
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 2.9e-91 339.3 228 78.5
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 2.9e-91 339.3 214 80.8
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 3.8e-91 339.0 217 78.8
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 3.8e-91 339.0 238 75.6
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 8.5e-91 337.8 239 74.1
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 8.5e-91 337.8 218 79.4
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 1.1e-90 337.4 290 62.4
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 1.1e-90 337.4 217 79.3
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 1.4e-90 337.0 216 80.6
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.5e-90 336.3 196 84.7
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 3.2e-90 335.9 217 80.2
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 4.2e-90 335.5 207 81.6
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 1.2e-89 334.0 273 69.2
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.6e-89 333.6 297 63.3
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 3.6e-89 332.4 217 78.8
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 4.7e-89 332.0 226 77.0
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 7.9e-89 331.3 223 75.8
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 1.8e-88 330.1 226 75.2
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 1.8e-88 330.1 228 73.7
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 2.3e-88 329.7 215 77.7
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 6.7e-88 328.2 224 76.3
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 2.6e-87 326.2 229 75.1
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 2.6e-87 326.2 301 60.1
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 5.7e-87 325.1 271 66.1
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 1.7e-86 323.6 198 81.8
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 2.8e-86 322.8 219 76.7
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 2.8e-86 322.8 208 76.4
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.0e-83 314.3 196 79.6
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 5.0e-83 312.0 219 71.2
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 6.5e-83 311.6 205 76.1
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.2e-81 307.4 183 81.4
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 2.1e-81 306.6 330 56.7
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.7e-81 306.2 183 80.3
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 3.6e-81 305.8 211 75.8
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 4.7e-81 305.4 229 66.8
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 8.0e-81 304.7 191 83.2
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 7.5e-79 298.1 175 88.0
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.4e-77 293.9 211 73.0
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.2e-76 290.8 221 70.1
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 2.7e-76 289.7 311 55.9
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 2.9e-75 286.2 214 69.6
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 8.5e-75 284.6 215 68.8
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.9e-74 283.5 193 73.1
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 5.5e-74 282.0 164 85.4
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 7.2e-74 281.6 188 73.4
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 3.6e-73 279.3 208 68.8
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 7.5e-71 271.6 194 65.5
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 1.7e-70 270.4 245 63.3
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 1.1e-69 267.7 301 57.1
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 1.0e-67 261.2 234 62.8
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 8.0e-65 251.5 156 82.7
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 2.5e-58 229.9 278 52.9
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 1.8e-53 213.8 219 57.1
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 4.7e-49 199.1 121 81.0
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 4.0e-48 196.1 217 49.3
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 6.8e-48 195.3 212 48.6
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.2e-47 194.5 110 86.4
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 9.8e-47 191.4 214 56.5
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 6.6e-43 178.7 195 50.3
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 7.3e-42 175.3 192 54.7
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.2e-41 174.5 120 77.5
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 2.3e-40 170.2 97 84.5
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 1.5e-39 167.5 97 83.5
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 2.9e-38 163.3 187 52.4
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 7.3e-34 148.7 268 42.5
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 1.4e-32 144.4 178 51.1
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 4.9e-30 136.0 142 55.6
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.4e-29 133.7 77 85.7
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 3.5e-28 129.8 76 82.9
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 1.9e-26 124.0 78 80.8
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.5e-18 97.8 134 50.0
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 2.1e-17 94.0 50 86.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 2.8e-17 93.6 51 84.3
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 2.8e-17 93.6 80 60.0
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 6.9e-16 89.0 52 82.7
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 9.0e-16 88.6 61 75.4
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.1e-10 71.6 55 65.5
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 1.5e-10 71.2 48 72.9
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 2.8e-09 67.0 47 68.1
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 3.4e-07 60.1 78 42.3
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 4.5e-07 59.7 47 63.8


User provided reference genes

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