Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 2.7e-118 430.3 654 100.0
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 1.9e-95 354.4 653 86.7
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 1.4e-77 295.0 198 77.3
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.0e-68 264.6 198 68.2
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 5.8e-68 263.1 197 68.0
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 6.4e-67 259.6 197 67.0
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 2.3e-64 251.1 200 66.5
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 3.9e-64 250.4 196 63.3
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 6.2e-62 243.0 658 84.5
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 3.4e-60 237.3 660 70.2
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.8e-59 233.8 197 63.5
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 6.4e-59 233.0 200 61.0
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 1.9e-58 231.5 201 60.7
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 7.1e-58 229.6 191 61.8
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 2.1e-57 228.0 206 60.2
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 2.3e-56 224.6 194 58.2
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 5.1e-56 223.4 193 58.5
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 8.7e-56 222.6 180 61.7
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 2.1e-54 218.0 193 60.6
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 4.8e-54 216.9 198 54.0
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 1.1e-53 215.7 207 57.5
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 3.1e-53 214.2 203 54.2
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 4.0e-53 213.8 193 56.5
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 6.9e-53 213.0 197 54.3
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 4.5e-52 210.3 189 57.7
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 4.5e-52 210.3 178 59.6
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 5.8e-52 209.9 199 57.3
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 7.6e-52 209.5 211 54.5
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 1.7e-51 208.4 198 55.6
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 2.2e-51 208.0 172 58.1
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 8.4e-51 206.1 200 57.0
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 3.2e-50 204.1 201 54.2
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 3.2e-50 204.1 170 59.4
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 4.2e-50 203.8 201 54.2
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 5.4e-50 203.4 201 55.2
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 5.4e-50 203.4 190 56.3
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 1.6e-49 201.8 203 53.7
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 1.6e-49 201.8 203 53.7
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 1.6e-49 201.8 206 51.9
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 2.7e-49 201.1 203 53.7
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 4.6e-49 200.3 163 60.1
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.3e-48 198.7 152 62.5
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 3.3e-47 194.1 137 66.4
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 2.8e-46 191.0 198 49.5
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 4.8e-46 190.3 180 52.2
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 2.4e-45 188.0 185 52.4
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 2.4e-45 188.0 185 53.0
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 6.4e-43 179.9 126 66.7
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 1.9e-42 178.3 148 60.1
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 7.1e-42 176.4 147 57.1
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 1.6e-41 175.3 157 55.4
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 2.1e-41 174.9 177 52.5
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 3.5e-41 174.1 211 47.9
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 6.0e-41 173.3 158 57.6
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 3.9e-40 170.6 141 58.2
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 9.6e-39 166.0 213 45.1
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 3.7e-38 164.1 174 50.0
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 4.8e-38 163.7 174 50.0
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 8.2e-38 162.9 146 54.1
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 8.2e-38 162.9 157 54.1
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 6.9e-37 159.8 202 48.5
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 6.9e-37 159.8 147 52.4
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 2.6e-36 157.9 199 46.2
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 2.2e-35 154.8 86 88.4
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 8.4e-35 152.9 198 49.0
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 1.9e-34 151.8 164 45.7
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 2.5e-34 151.4 193 47.2
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 9.3e-34 149.4 147 54.4
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 4.6e-33 147.1 212 42.5
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 1.8e-32 145.2 84 79.8
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.3e-32 144.8 146 52.7
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.3e-32 144.8 146 52.7
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.3e-32 144.8 116 65.5
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 5.1e-32 143.7 147 51.7
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 5.1e-32 143.7 166 44.0
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.1e-31 142.5 187 44.4
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 5.7e-31 140.2 183 49.2
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 3.7e-30 137.5 202 43.6
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 8.2e-30 136.3 188 41.0
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 5.3e-29 133.7 157 43.9
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 9.0e-29 132.9 100 62.0
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 9.0e-29 132.9 169 46.2
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 1.2e-28 132.5 102 64.7
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 2.0e-28 131.7 143 50.3
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 2.6e-28 131.3 143 49.7
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 4.5e-28 130.6 100 60.0
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 6.5e-27 126.7 102 60.8
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 6.5e-27 126.7 151 48.3
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 8.5e-27 126.3 84 76.2
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 1.4e-26 125.6 86 75.6
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.9e-26 125.2 84 77.4
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 1.9e-26 125.2 86 76.7
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 2.5e-26 124.8 143 47.6
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 5.5e-26 123.6 86 72.1
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 1.2e-25 122.5 85 65.9
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 1.0e-24 119.4 86 67.4
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 3.0e-24 117.9 86 67.4
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 3.9e-24 117.5 86 69.8
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 8.8e-24 116.3 86 68.6
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 5.7e-23 113.6 162 37.7
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 1.1e-18 99.4 83 57.8
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 4.2e-18 97.4 157 38.2
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 4.7e-17 94.0 125 44.8
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 3.9e-16 90.9 84 56.0
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 6.7e-16 90.1 49 85.7
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 7.4e-15 86.7 79 49.4
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 9.7e-15 86.3 56 75.0
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 7.0e-13 80.1 64 64.1
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 1.0e-11 76.3 83 49.4


User provided reference genes

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