Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 4.1e-100 369.0 208 100.0
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 5.5e-65 252.3 209 66.5
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 8.6e-42 175.3 201 50.7
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 2.3e-34 150.6 208 46.2
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 2.3e-34 150.6 208 46.2
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.1e-33 148.3 208 46.2
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 7.3e-33 145.6 209 44.0
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 7.3e-33 145.6 209 44.0
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 1.3e-24 118.2 174 40.8
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 2.0e-22 110.9 176 42.0
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 2.6e-22 110.5 130 47.7
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 9.9e-22 108.6 176 39.8
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 1.3e-21 108.2 135 45.2
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 4.9e-21 106.3 149 40.9
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 6.4e-21 105.9 127 48.0
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 6.4e-21 105.9 127 47.2
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 8.4e-21 105.5 142 45.8
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 1.4e-20 104.8 176 40.3
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 7.1e-20 102.4 128 46.1
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 9.3e-20 102.1 166 39.2
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.2e-19 101.7 174 34.5
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 1.2e-19 101.7 153 40.5
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 1.6e-19 101.3 122 47.5
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 2.7e-19 100.5 155 40.6
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 2.7e-19 100.5 156 39.7
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 1.3e-18 98.2 154 39.0
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 2.3e-18 97.4 177 38.4
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 3.9e-18 96.7 151 41.1
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 6.6e-18 95.9 132 44.7
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.9e-17 94.4 172 39.5
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.9e-17 94.4 172 39.5
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 1.9e-17 94.4 155 37.4
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 4.3e-17 93.2 134 40.3
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 4.3e-17 93.2 131 39.7
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 4.3e-17 93.2 133 44.4
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 5.6e-17 92.8 161 41.0
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 9.6e-17 92.0 176 36.9
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 9.6e-17 92.0 154 36.4
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 3.6e-16 90.1 131 42.7
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 4.8e-16 89.7 132 40.2
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 1.1e-15 88.6 130 37.7
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.1e-15 88.6 134 38.1
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 1.4e-15 88.2 132 38.6
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 1.8e-15 87.8 152 35.5
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 2.4e-15 87.4 147 38.8
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 2.4e-15 87.4 141 40.4
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 3.1e-15 87.0 132 37.1
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 3.1e-15 87.0 141 40.4
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 4.0e-15 86.7 132 37.1
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 6.9e-15 85.9 125 38.4
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 6.9e-15 85.9 177 32.2
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 9.0e-15 85.5 132 37.1
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 9.0e-15 85.5 154 37.0
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 1.2e-14 85.1 123 42.3
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 2.0e-14 84.3 132 38.6
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 2.0e-14 84.3 132 37.1
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 2.0e-14 84.3 131 38.9
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 2.6e-14 84.0 206 30.6
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 4.5e-14 83.2 154 32.5
MD14G1065400 Malus domestica HOM05D007281 ORTHO05D009241 4.5e-14 83.2 47 76.6
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 4.5e-14 83.2 132 37.1
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 5.8e-14 82.8 129 35.7
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 5.8e-14 82.8 133 42.1
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 7.6e-14 82.4 133 34.6
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 1.3e-13 81.6 122 40.2
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 1.7e-13 81.3 159 34.6
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 2.9e-13 80.5 105 41.0
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 2.9e-13 80.5 123 36.6
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 2.9e-13 80.5 123 36.6
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 3.8e-13 80.1 154 31.8
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 3.8e-13 80.1 99 42.4
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 3.8e-13 80.1 128 39.8
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 4.9e-13 79.7 132 34.8
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 4.9e-13 79.7 132 34.8
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 6.4e-13 79.3 134 36.6
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 8.4e-13 79.0 173 33.5
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 1.4e-12 78.2 149 34.9
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 1.9e-12 77.8 132 38.6
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 1.6e-11 74.7 115 37.4
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 1.6e-11 74.7 132 34.1
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 1.6e-11 74.7 139 36.7
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 4.6e-11 73.2 132 34.1
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 6.0e-11 72.8 152 31.6
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 1.3e-10 71.6 126 31.7
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 1.8e-10 71.2 130 34.6
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 6.7e-10 69.3 149 32.9
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 8.7e-10 68.9 101 41.6
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 1.6e-08 64.7 128 32.8
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 6.2e-08 62.8 101 30.7
RcHm_v2.0_Chr2g0161831 Rosa chinensis HOM05D007281 ORTHO05D009241 1.1e-07 62.0 42 64.3
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 4.0e-07 60.1 157 30.6
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 5.3e-07 59.7 152 32.2
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 1.5e-06 58.2 157 28.0
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 2.0e-06 57.8 157 28.0
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 5.8e-06 56.2 125 31.2


User provided reference genes

Program Settings