Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 4.3e-44 181.0 97 100.0
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 3.4e-41 171.4 99 88.9
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 4.4e-41 171.0 95 95.8
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 3.3e-28 128.3 97 68.0
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 6.9e-26 120.6 101 63.4
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 1.2e-22 109.8 95 53.7
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.9e-21 104.8 95 56.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.9e-21 104.8 95 56.8
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 5.1e-21 104.4 95 50.5
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 5.1e-21 104.4 97 48.5
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-20 102.8 62 74.2
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.3e-20 101.7 97 46.4
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 5.6e-20 100.9 93 57.0
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.6e-20 100.9 93 57.0
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.4e-20 100.5 92 57.6
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 7.4e-20 100.5 94 52.1
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 9.6e-20 100.1 97 51.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.6e-19 99.4 71 67.6
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-19 99.4 94 51.1
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-19 99.0 83 60.2
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.1e-19 99.0 97 47.4
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.1e-19 99.0 94 52.1
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-19 98.2 97 58.8
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.8e-19 97.8 97 46.4
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 6.2e-19 97.4 92 54.3
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.1e-18 96.7 92 51.1
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.4e-18 96.3 100 50.0
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.4e-18 96.3 95 48.4
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.4e-18 96.3 95 48.4
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.8e-18 95.9 97 51.5
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.4e-18 95.5 98 46.9
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.4e-18 95.5 92 52.2
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.0e-18 94.7 94 47.9
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.3e-18 94.4 86 50.0
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-17 93.2 97 44.3
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.0e-17 92.4 97 47.4
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.0e-17 92.4 92 52.2
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 2.6e-17 92.0 62 66.1
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 4.5e-17 91.3 85 54.1
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 4.5e-17 91.3 85 50.6
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 5.8e-17 90.9 98 53.1
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 5.8e-17 90.9 90 60.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-17 90.9 98 55.1
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 5.8e-17 90.9 94 48.9
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 7.6e-17 90.5 53 73.6
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 7.6e-17 90.5 101 51.5
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 7.6e-17 90.5 64 64.1
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 7.6e-17 90.5 64 64.1
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.0e-16 90.1 89 51.7
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.0e-16 90.1 98 45.9
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 1.3e-16 89.7 72 59.7
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-16 89.7 98 54.1
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.2e-16 89.0 95 45.3
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 2.9e-16 88.6 92 47.8
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 6.5e-16 87.4 98 45.9
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 6.5e-16 87.4 96 52.1
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 8.4e-16 87.0 90 56.7
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.1e-15 86.7 86 48.8
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-15 86.7 91 54.9
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.4e-15 86.3 92 50.0
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.4e-15 86.3 96 47.9
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-15 85.1 91 53.8
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 3.2e-15 85.1 95 50.5
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 5.5e-15 84.3 99 47.5
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 5.5e-15 84.3 101 47.5
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.5e-15 84.3 94 47.9
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.5e-15 84.3 97 43.3
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 9.3e-15 83.6 89 49.4
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 9.3e-15 83.6 94 45.7
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 9.3e-15 83.6 95 44.2
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.3e-15 83.6 95 42.1
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-14 82.8 96 50.0
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 2.1e-14 82.4 96 53.1
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.5e-14 81.6 97 44.3
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 94 46.8
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 99 48.5
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 99 48.5
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 99 48.5
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.5e-14 81.6 89 51.7
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.6e-14 81.3 89 48.3
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.9e-14 80.5 90 43.3
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 7.9e-14 80.5 95 48.4
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.0e-13 80.1 98 42.9
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.0e-13 80.1 94 46.8
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.0e-13 80.1 94 45.7
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.3e-13 79.7 98 44.9
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 1.3e-13 79.7 89 41.6
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.3e-13 79.7 95 44.2
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 1.8e-13 79.3 106 40.6
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.8e-13 79.3 95 41.1
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-13 79.0 104 39.4
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 2.3e-13 79.0 98 43.9
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.0e-13 78.6 71 52.1
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.0e-13 78.6 53 62.3
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 3.9e-13 78.2 44 77.3
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.9e-13 78.2 67 53.7
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 5.1e-13 77.8 98 40.8
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.1e-13 77.8 94 43.6
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 5.1e-13 77.8 85 45.9
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.7e-13 77.4 93 40.9
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 6.7e-13 77.4 99 46.5
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.7e-13 77.0 93 39.8
FAN08G0703 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-12 76.6 88 51.1
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.1e-12 76.6 89 47.2
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.1e-12 76.6 94 41.5
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.9e-12 75.9 94 38.3
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-12 75.9 92 42.4
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-12 75.9 104 37.5
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 1.9e-12 75.9 94 46.8
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-12 75.5 95 45.3
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-12 75.5 82 47.6
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 2.5e-12 75.5 106 37.7
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 4.3e-12 74.7 95 44.2
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 4.3e-12 74.7 95 44.2
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 7.4e-12 73.9 51 60.8
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.4e-12 73.9 92 41.3
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 7.4e-12 73.9 57 56.1
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 9.7e-12 73.6 98 42.9
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 9.7e-12 73.6 66 53.0
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-11 72.8 88 43.2
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-11 72.8 125 39.2
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.8e-11 72.0 83 45.8
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 2.8e-11 72.0 96 41.7
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 2.8e-11 72.0 91 44.0
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.7e-11 71.6 76 44.7
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 4.8e-11 71.2 96 38.5
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.8e-11 71.2 89 37.1
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 4.8e-11 71.2 57 49.1
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 4.8e-11 71.2 50 56.0
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.2e-11 70.5 96 34.4
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-10 70.1 86 44.2
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 1.1e-10 70.1 99 39.4
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-10 69.7 90 38.9
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.8e-10 69.3 89 37.1
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.8e-10 69.3 97 43.3
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-10 68.9 56 50.0
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 4.1e-10 68.2 94 41.5
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 4.1e-10 68.2 89 42.7
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 4.1e-10 68.2 97 42.3
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 5.3e-10 67.8 49 59.2
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.9e-10 67.4 88 42.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 6.9e-10 67.4 100 42.0
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.0e-10 67.0 52 51.9
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 9.0e-10 67.0 91 42.9
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 9.0e-10 67.0 93 36.6
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-09 66.6 62 48.4
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 1.5e-09 66.2 88 43.2
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-09 66.2 95 33.7
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-09 66.2 95 33.7
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 2.0e-09 65.9 80 40.0
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 3.4e-09 65.1 50 50.0
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 3.4e-09 65.1 89 42.7
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.4e-09 65.1 94 36.2
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 4.5e-09 64.7 89 42.7
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 4.5e-09 64.7 93 37.6
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 4.5e-09 64.7 98 33.7
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.9e-09 64.3 94 37.2
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-08 63.5 65 46.2
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-08 63.2 52 51.9
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.7e-08 62.8 96 35.4
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 1.7e-08 62.8 94 39.4
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 2.2e-08 62.4 51 49.0
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.2e-08 62.4 89 34.8
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.2e-08 62.4 50 48.0
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.2e-08 62.4 55 49.1
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.9e-08 62.0 46 52.2
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.9e-08 62.0 46 52.2
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-08 62.0 92 41.3
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-08 62.0 53 49.1
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 3.8e-08 61.6 90 34.4
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 3.8e-08 61.6 50 44.0
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 8.5e-08 60.5 51 47.1
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.5e-08 60.5 53 47.2
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-07 60.1 45 60.0
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.4e-07 59.7 46 54.3
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.4e-07 59.7 46 54.3
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.9e-07 59.3 46 50.0
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-07 58.5 51 41.2
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 4.2e-07 58.2 55 47.3
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.5e-07 57.8 51 39.2
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 9.3e-07 57.0 90 33.3
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.2e-06 56.6 98 34.7
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 2.1e-06 55.8 50 48.0


User provided reference genes

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