Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G229200 Prunus persica HOM05D002663 ORTHO05D002988 1.0e-57 226.5 111 100.0
Prupe.8G250200 Prunus persica HOM05D002663 ORTHO05D002988 1.0e-20 103.6 99 61.6
Prupe.3G229100 Prunus persica HOM05D002663 ORTHO05D002988 7.1e-19 97.4 77 68.8
FAN24G0935 Fragaria x ananassa HOM05D002663 ORTHO05D002988 1.3e-17 93.2 99 56.6
FvH4_2g24450 Fragaria vesca HOM05D002663 ORTHO05D002988 3.0e-17 92.0 99 56.6
RcHm_v2.0_Chr6g0292291 Rosa chinensis HOM05D002663 ORTHO05D002988 8.7e-17 90.5 94 58.5
FAN27G1532 Fragaria x ananassa HOM05D002663 ORTHO05D002988 1.5e-16 89.7 99 56.6
FAN15G3524 Fragaria x ananassa HOM05D002663 ORTHO05D002988 2.5e-16 89.0 99 55.6
FAN20G1908 Fragaria x ananassa HOM05D002663 ORTHO05D002988 5.7e-16 87.8 98 55.1
Prupe.7G125500 Prunus persica HOM05D002663 ORTHO05D334743 7.4e-16 87.4 85 60.0
ClCG05G012270 Citrullus lanatus HOM05D002663 ORTHO05D002988 9.7e-16 87.0 94 56.4
CsaV3_3G020180 Cucumis sativus L. HOM05D002663 ORTHO05D002988 9.7e-16 87.0 94 53.2
Actinidia00709 Actinidia chinensis HOM05D002663 ORTHO05D002988 2.8e-15 85.5 94 54.3
Ah.08g212770 Amaranthus hybridus HOM05D002663 ORTHO05D002988 4.8e-15 84.7 94 54.3
vmacro02520 Vaccinium macrocarpon HOM05D002663 ORTHO05D002988 1.4e-14 83.2 94 54.3
Gohir.A11G118800 Gossypium hirsutum HOM05D002663 ORTHO05D002988 1.8e-14 82.8 99 50.5
Potri.015G042100 Populus trichocarpa HOM05D002663 ORTHO05D002988 1.8e-14 82.8 94 51.1
MELO3C023740.2 Cucumis melo HOM05D002663 ORTHO05D002988 2.4e-14 82.4 94 53.2
Sabra15G0051000 Salix brachista HOM05D002663 ORTHO05D002988 2.4e-14 82.4 94 51.1
Sabra15G0054700 Salix brachista HOM05D002663 ORTHO05D002988 2.4e-14 82.4 94 51.1
Sabra15G0061200 Salix brachista HOM05D002663 ORTHO05D002988 2.4e-14 82.4 94 51.1
Cfa006059 Carpinus fangiana HOM05D002663 ORTHO05D002988 3.1e-14 82.0 94 52.1
TAR362G0766 Trochodendron aralioides HOM05D002663 ORTHO05D002988 3.1e-14 82.0 94 50.0
Gorai.007G132600 Gossypium raimondii HOM05D002663 ORTHO05D002988 4.1e-14 81.6 99 49.5
MD11G1296300 Malus domestica HOM05D002663 ORTHO05D002988 4.1e-14 81.6 99 51.5
Sed0012646 Sechium edule HOM05D002663 ORTHO05D002988 5.3e-14 81.3 94 52.1
EL10Ac8g19575 Beta vulgaris HOM05D002663 ORTHO05D002988 6.9e-14 80.9 94 53.2
Eucgr.K03423 Eucalyptus grandis HOM05D002663 ORTHO05D002988 6.9e-14 80.9 94 53.2
TWI14G0131 Tripterygium wilfordii HOM05D002663 ORTHO05D002988 6.9e-14 80.9 94 51.1
arahy.Tifrunner.gnm1.ann1.IMR5XM Arachis hypogaea HOM05D002663 ORTHO05D002988 9.0e-14 80.5 99 50.5
arahy.Tifrunner.gnm1.ann1.JDYV4L Arachis hypogaea HOM05D002663 ORTHO05D002988 9.0e-14 80.5 99 50.5
Glyma.05G165200 Glycine max HOM05D002663 ORTHO05D002988 9.0e-14 80.5 94 52.1
VMungo0251G0385 Vigna mungo HOM05D002663 ORTHO05D002988 9.0e-14 80.5 94 53.2
Manes.05G070100 Manihot esculenta HOM05D002663 ORTHO05D002988 1.2e-13 80.1 94 50.0
Hund05368 Selenicereus undatus HOM05D002663 ORTHO05D002988 1.2e-13 80.1 94 51.1
Glyma.08G122600 Glycine max HOM05D002663 ORTHO05D002988 1.5e-13 79.7 94 51.1
Nn3g21225 Nelumbo nucifera HOM05D002663 ORTHO05D002988 1.5e-13 79.7 94 51.1
QL12p023424 Quercus lobata HOM05D002663 ORTHO05D002988 1.5e-13 79.7 94 51.1
PGSC0003DMG400016854 Solanum tuberosum HOM05D002663 ORTHO05D002988 1.5e-13 79.7 94 52.1
Cpa.g.sc9.146 Carica papaya HOM05D002663 ORTHO05D002988 2.6e-13 79.0 94 51.1
Nitab4.5_0001651g0140 Nicotiana tabacum HOM05D002663 ORTHO05D002988 2.6e-13 79.0 94 51.1
Nitab4.5_0010231g0020 Nicotiana tabacum HOM05D002663 ORTHO05D002988 2.6e-13 79.0 94 51.1
Phvul.002G245400 Phaseolus vulgaris HOM05D002663 ORTHO05D002988 2.6e-13 79.0 94 52.1
AUR62034595 Chenopodium quinoa HOM05D002663 ORTHO05D002988 3.4e-13 78.6 94 51.1
AUR62036674 Chenopodium quinoa HOM05D002663 ORTHO05D002988 3.4e-13 78.6 94 51.1
AUR62044300 Chenopodium quinoa HOM05D002663 ORTHO05D002988 3.4e-13 78.6 94 51.1
SalBow2G2285 Salvia bowleyana HOM05D002663 ORTHO05D002988 3.4e-13 78.6 94 52.1
EL10Ac5g11662 Beta vulgaris HOM05D002663 ORTHO05D002988 4.5e-13 78.2 94 52.1
Cc01_g20040 Coffea canephora HOM05D002663 ORTHO05D002988 4.5e-13 78.2 94 51.1
PGR044G1923 Punica granatum HOM05D002663 ORTHO05D002988 4.5e-13 78.2 94 50.0
Solyc09g074310.3 Solanum lycopersicum HOM05D002663 ORTHO05D002988 4.5e-13 78.2 94 51.1
Sopen09g029140 Solanum pennellii HOM05D002663 ORTHO05D002988 4.5e-13 78.2 94 51.1
Thecc.01G288300 Theobroma cacao HOM05D002663 ORTHO05D002988 4.5e-13 78.2 94 48.9
Dinv11283 Davidia involucrata HOM05D002663 ORTHO05D002988 5.9e-13 77.8 94 51.1
CAN.G806.1 Capsicum annuum HOM05D002663 ORTHO05D002988 7.6e-13 77.4 94 50.0
Hma1.2p1_1651F.1_g295770 Hydrangea macrophylla HOM05D002663 ORTHO05D002988 7.6e-13 77.4 94 48.9
Rhsim13G0018700 Rhododendron simsii HOM05D002663 ORTHO05D002988 7.6e-13 77.4 94 51.1
Psat7g065720 Pisum sativum HOM05D002663 ORTHO05D002988 1.0e-12 77.0 94 52.1
CSS0004482 Camellia sinensis var. sinensis HOM05D002663 ORTHO05D002988 1.3e-12 76.6 94 51.1
Migut.N02124 Erythranthe guttata HOM05D002663 ORTHO05D002988 1.3e-12 76.6 94 52.1
Lj1A40T82 Lonicera japonica HOM05D002663 ORTHO05D002988 1.3e-12 76.6 94 47.9
Atru.chr5.1301_Atru.chr5.1302 Acer truncatum HOM05D002663 ORTHO05D002988 2.2e-12 75.9 94 48.9
ATR0487G012 Amborella trichopoda HOM05D002663 ORTHO05D002988 2.2e-12 75.9 94 47.9
Ca_17862_v3 Cicer arietinum L. HOM05D002663 ORTHO05D002988 2.9e-12 75.5 94 52.1
Oeu001452.1 Olea europaea HOM05D002663 ORTHO05D002988 2.9e-12 75.5 94 48.9
TPR.G6748 Trifolium pratense HOM05D002663 ORTHO05D002988 5.0e-12 74.7 94 48.9
Lalb_Chr13g0295491 Lupinus albus HOM05D002663 ORTHO05D002988 6.5e-12 74.3 94 48.9
Peaxi162Scf00006g03625 Petunia axillaris HOM05D002663 ORTHO05D002988 6.5e-12 74.3 94 48.9
Prupe.8G162600 Prunus persica HOM05D002663 ORTHO05D002988 8.5e-12 73.9 48 77.1
CANSAT25G2471 Cannabis sativa HOM05D002663 ORTHO05D002988 1.1e-11 73.6 94 47.9
HPP92_011329 Vanilla planifolia HOM05D002663 ORTHO05D002988 1.1e-11 73.6 99 48.5
Haze_04793 Corylus avellana HOM05D002663 ORTHO05D002988 1.4e-11 73.2 116 42.2
ECA248G0286 Erigeron canadensis HOM05D002663 ORTHO05D002988 2.5e-11 72.4 94 47.9
Sc24g0004050 Simmondsia chinensis HOM05D002663 ORTHO05D002988 2.5e-11 72.4 94 48.9
Medtr8g088160 Medicago truncatula HOM05D002663 ORTHO05D002988 3.2e-11 72.0 94 48.9
HanXRQChr11g0334821 Helianthus annuus HOM05D002663 ORTHO05D002988 1.2e-10 70.1 94 45.7
MBI19_g25933_MAGBIO Magnolia biondii HOM05D002663 ORTHO05D002988 2.7e-10 68.9 94 45.7
Os11g0645200 Oryza sativa ssp. japonica HOM05D002663 ORTHO05D002988 6.1e-10 67.8 94 47.9
DCAR_018373 Daucus carota HOM05D002663 ORTHO05D002988 1.0e-09 67.0 94 46.8
Lsat_1_v5_gn_5_189660 Lactuca sativa HOM05D002663 ORTHO05D002988 1.8e-09 66.2 94 45.7
Lj4g0008753 Lotus japonicus HOM05D002663 ORTHO05D002988 2.3e-09 65.9 89 47.2
unitig_744.g24628 Utricularia gibba HOM05D002663 ORTHO05D002988 4.3e-08 61.6 94 41.5
SMO236G0130 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 7.4e-08 60.8 94 42.6
Pp3c21_17600 Physcomitrium patens HOM05D002663 ORTHO05D002988 1.3e-07 60.1 99 41.4
Mapoly0131s0005 Marchantia polymorpha HOM05D002663 ORTHO05D002988 1.7e-07 59.7 99 40.4
GSVIVG01011028001 Vitis vinifera HOM05D002663 ORTHO05D002988 6.3e-07 57.8 42 66.7
Cre03.g195050 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 1.1e-06 57.0 94 40.4
Lsat_1_v5_gn_4_167840 Lactuca sativa HOM05D002663 ORTHO05D002988 1.8e-06 56.2 44 65.9
AagrBONN_evm.TU.Sc2ySwM_228.654 Anthoceros agrestis HOM05D002663 ORTHO05D002988 2.4e-06 55.8 103 40.8
CDE05G0856 Ceratophyllum demersum HOM05D000039 ORTHO05D002988 2.4e-06 55.8 42 61.9
CBR_g34010 Chara braunii HOM05D002663 ORTHO05D002988 4.1e-06 55.1 99 40.4
CBR_g410 Chara braunii HOM05D002663 ORTHO05D002988 9.1e-06 53.9 99 40.4
SGA_v2.0_scaffold172G39055 Striga asiatica HOM05D002663 ORTHO05D002988 9.1e-06 53.9 48 62.5


User provided reference genes

Program Settings