Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 1.5e-104 382.9 191 100.0
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 5.6e-80 301.2 193 82.9
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 1.6e-79 299.7 197 79.7
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 2.0e-77 292.7 194 81.4
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 2.0e-77 292.7 194 81.4
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 8.4e-76 287.3 194 79.4
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 4.6e-74 281.6 194 78.9
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.8e-70 269.6 215 70.7
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 8.4e-68 260.8 197 70.1
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 7.1e-67 257.7 192 70.8
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 2.7e-66 255.8 193 69.4
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 2.3e-65 252.7 197 72.1
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 3.0e-65 252.3 193 69.9
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 1.1e-64 250.4 193 68.4
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 1.5e-64 250.0 199 70.4
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 1.5e-64 250.0 198 66.7
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 2.5e-64 249.2 193 68.4
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 1.6e-63 246.5 186 69.4
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 1.6e-63 246.5 194 66.0
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 1.6e-63 246.5 194 68.0
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 4.8e-63 245.0 194 68.0
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 6.2e-63 244.6 192 66.7
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 6.2e-63 244.6 194 65.5
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 1.1e-62 243.8 194 65.5
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 1.1e-62 243.8 190 66.3
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 2.4e-62 242.7 194 65.5
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 5.3e-62 241.5 194 64.4
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 6.9e-62 241.1 192 67.2
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 6.9e-62 241.1 194 68.0
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 7.6e-61 237.7 192 64.6
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 7.6e-61 237.7 196 65.8
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 1.7e-60 236.5 191 63.4
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 8.4e-60 234.2 141 76.6
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 1.4e-59 233.4 196 62.8
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 1.9e-59 233.0 193 63.2
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 2.4e-59 232.6 140 76.4
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 3.2e-59 232.3 140 77.1
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 4.2e-59 231.9 177 66.1
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 1.0e-57 227.3 193 63.7
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 1.3e-57 226.9 193 61.7
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 3.0e-57 225.7 194 61.9
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 3.9e-57 225.3 191 60.7
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 2.5e-56 222.6 193 61.1
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 2.5e-56 222.6 198 63.1
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 3.3e-56 222.2 202 58.4
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 4.3e-56 221.9 195 61.0
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 5.6e-56 221.5 188 62.2
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 2.1e-55 219.5 196 61.2
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 2.8e-55 219.2 192 60.4
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 4.8e-55 218.4 194 62.9
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 8.1e-55 217.6 178 62.9
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 8.1e-55 217.6 193 60.1
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 8.1e-55 217.6 192 60.4
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 8.1e-55 217.6 192 60.9
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 8.1e-55 217.6 194 61.9
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 8.1e-55 217.6 195 61.5
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 8.1e-55 217.6 193 59.1
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 1.4e-54 216.9 198 60.1
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 2.4e-54 216.1 198 59.1
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 3.1e-54 215.7 193 61.1
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 4.0e-54 215.3 219 57.1
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 5.3e-54 214.9 199 59.8
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 6.9e-54 214.5 189 59.8
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 1.2e-53 213.8 193 60.6
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 2.6e-53 212.6 187 61.0
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 7.6e-53 211.1 183 59.0
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 1.0e-52 210.7 209 55.5
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 2.2e-52 209.5 140 72.9
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 2.2e-52 209.5 138 69.6
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 2.9e-52 209.1 187 59.4
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 2.9e-52 209.1 122 77.9
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 3.8e-52 208.8 138 71.7
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 4.9e-52 208.4 189 57.7
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 6.5e-52 208.0 122 78.7
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 6.5e-52 208.0 140 72.1
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 8.4e-52 207.6 186 60.8
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 8.4e-52 207.6 187 59.9
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 8.4e-52 207.6 122 78.7
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 1.4e-51 206.8 163 63.2
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 1.9e-51 206.5 122 78.7
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 1.9e-51 206.5 187 59.9
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 1.9e-51 206.5 195 60.0
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 2.1e-50 203.0 187 58.8
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 2.7e-50 202.6 193 57.0
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 2.7e-50 202.6 192 56.2
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 2.7e-50 202.6 192 56.2
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 3.5e-50 202.2 194 59.8
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 3.5e-50 202.2 189 59.3
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 4.6e-50 201.8 193 57.0
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 6.0e-50 201.4 198 57.6
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 7.9e-50 201.1 168 64.3
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 1.1e-48 197.2 185 57.3
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.5e-48 196.8 192 55.2
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 1.5e-48 196.8 187 52.9
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 2.5e-48 196.1 200 54.5
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 1.3e-47 193.7 144 63.9
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 3.7e-47 192.2 111 79.3
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 1.1e-46 190.7 244 48.4
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 3.1e-46 189.1 186 53.2
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 9.0e-46 187.6 220 50.5
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 1.5e-45 186.8 151 69.5
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 2.6e-45 186.0 181 51.4
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 7.6e-45 184.5 173 53.8
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 1.3e-44 183.7 168 54.8
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.7e-44 183.3 112 74.1
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 7.2e-43 177.9 122 73.8
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 1.2e-42 177.2 116 66.4
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 4.6e-42 175.3 116 68.1
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 6.7e-41 171.4 152 60.5
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 8.7e-41 171.0 148 61.5
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 2.4e-38 162.9 147 55.8
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 9.1e-38 161.0 156 57.7
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.5e-37 160.2 91 78.0
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 1.5e-37 160.2 126 58.7
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 3.4e-37 159.1 144 52.8
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 2.2e-36 156.4 126 66.7
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 2.7e-34 149.4 90 70.0
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 4.6e-34 148.7 148 58.1
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 2.3e-33 146.4 109 62.4
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 6.7e-33 144.8 92 72.8
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 4.1e-30 135.6 132 50.8
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 4.2e-27 125.6 116 50.0
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 2.1e-26 123.2 73 74.0
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 7.9e-26 121.3 120 58.3
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 1.4e-25 120.6 85 70.6
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 3.0e-25 119.4 115 50.4
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 6.5e-20 101.7 95 51.6
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 2.5e-19 99.8 134 50.0
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 4.2e-19 99.0 160 44.4
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 5.5e-19 98.6 106 48.1
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 1.4e-17 94.0 113 52.2
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 2.0e-13 80.1 195 29.7
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 6.1e-10 68.6 65 58.5
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 7.5e-08 61.6 37 75.7
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.8e-07 59.7 43 60.5
Gohir.D13G064066 Gossypium hirsutum HOM05D049681 ORTHO05D006780 4.1e-06 55.8 36 72.2


User provided reference genes

Program Settings