Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 9.3e-65 250.8 205 100.0
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 1.1e-17 94.4 81 69.1
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 1.9e-17 93.6 82 62.2
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 1.9e-17 93.6 77 68.8
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 2.5e-17 93.2 78 70.5
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.2e-17 92.4 64 78.1
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 5.5e-17 92.0 80 65.0
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 5.5e-17 92.0 73 68.5
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 7.2e-17 91.7 77 68.8
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 7.2e-17 91.7 72 66.7
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.2e-16 90.9 81 69.1
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 1.2e-16 90.9 81 65.4
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 1.2e-16 90.9 63 77.8
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 1.6e-16 90.5 77 67.5
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 2.1e-16 90.1 67 70.1
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 2.1e-16 90.1 67 73.1
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.8e-16 89.7 81 67.9
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 2.8e-16 89.7 68 76.5
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 3.6e-16 89.4 58 77.6
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 6.1e-16 88.6 74 70.3
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 1.4e-15 87.4 60 73.3
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.8e-15 87.0 81 66.7
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.8e-15 87.0 55 81.8
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 3.0e-15 86.3 74 68.9
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 8.8e-15 84.7 61 77.0
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 9.8e-14 81.3 80 61.2
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 1.3e-13 80.9 60 68.3
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 1.7e-13 80.5 90 55.6
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 2.2e-13 80.1 73 65.8
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.8e-13 79.7 67 67.2
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 2.8e-13 79.7 67 67.2
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 6.3e-13 78.6 62 66.1
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 1.4e-12 77.4 64 64.1
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 1.4e-12 77.4 78 59.0
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.8e-12 77.0 49 77.6
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 1.8e-12 77.0 67 61.2
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.8e-12 77.0 62 66.1
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 3.1e-12 76.3 77 61.0
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 3.1e-12 76.3 72 61.1
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 4.1e-12 75.9 79 58.2
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 9.2e-12 74.7 69 63.8
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 9.2e-12 74.7 69 63.8
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 1.2e-11 74.3 76 57.9
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 1.6e-11 73.9 82 58.5
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 2.0e-11 73.6 72 56.9
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 3.5e-11 72.8 64 59.4
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 5.9e-11 72.0 74 52.7
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 7.8e-11 71.6 74 52.7
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 1.7e-10 70.5 76 60.5
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 1.7e-10 70.5 72 54.2
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 2.3e-10 70.1 77 58.4
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 2.9e-10 69.7 79 57.0
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 5.0e-10 68.9 67 52.2
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 5.0e-10 68.9 109 58.7
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 8.6e-10 68.2 69 53.6
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 1.5e-09 67.4 64 57.8
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 2.5e-09 66.6 74 58.1
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 3.3e-09 66.2 70 47.1
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 3.3e-09 66.2 84 52.4
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 4.3e-09 65.9 76 52.6
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 2.8e-08 63.2 72 54.2
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 3.6e-08 62.8 71 60.6
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 8.0e-08 61.6 78 51.3
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 8.0e-08 61.6 74 54.1
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 8.0e-08 61.6 71 54.9
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 1.4e-07 60.8 75 46.7
SHI10279 Sapria himalayana HOM05D007783 ORTHO05D009740 2.3e-07 60.1 84 47.6
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 2.3e-07 60.1 75 52.0
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 3.0e-07 59.7 64 56.2
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 3.0e-07 59.7 43 67.4
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 6.8e-07 58.5 64 56.2
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 6.8e-07 58.5 64 56.2
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 1.2e-06 57.8 90 46.7
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 3.4e-06 56.2 62 54.8
Glyma.12G103000 Glycine max HOM05D007783 ORTHO05D009740 4.4e-06 55.8 53 50.9
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 5.7e-06 55.5 53 58.5
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 5.7e-06 55.5 52 59.6
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 5.7e-06 55.5 52 59.6
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 5.7e-06 55.5 74 50.0
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 5.7e-06 55.5 52 59.6
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 5.7e-06 55.5 52 59.6


User provided reference genes

Program Settings