Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 9.6e-68 260.0 128 100.0
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 3.4e-57 224.9 128 86.7
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 2.9e-56 221.9 128 83.6
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 1.4e-50 203.0 129 79.8
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.5e-49 199.5 129 76.7
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 4.5e-49 198.0 129 76.7
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.5e-49 198.0 129 76.7
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.8e-48 194.9 129 76.0
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 5.0e-48 194.5 129 75.2
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.9e-47 192.6 129 76.0
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 2.5e-39 165.6 130 71.5
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 1.3e-35 153.3 141 63.1
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 2.2e-35 152.5 142 62.7
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 4.1e-34 148.3 136 64.7
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 4.1e-34 148.3 136 64.7
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 2.6e-33 145.6 139 59.7
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.3e-32 143.3 134 64.9
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.7e-32 142.9 142 60.6
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.7e-32 142.9 134 62.7
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 1.1e-31 140.2 132 59.8
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.2e-30 136.7 134 62.7
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 3.6e-30 135.2 138 59.4
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 1.0e-29 133.7 138 59.4
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 3.0e-29 132.1 132 62.1
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 3.3e-28 128.6 138 56.5
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 7.4e-28 127.5 139 56.8
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 1.4e-26 123.2 124 56.5
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.4e-26 123.2 138 55.1
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 7.0e-26 120.9 139 55.4
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 7.0e-26 120.9 126 56.3
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 7.0e-26 120.9 125 60.8
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 7.0e-26 120.9 137 53.3
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 1.2e-25 120.2 124 53.2
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 2.6e-25 119.0 124 53.2
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 2.6e-25 119.0 124 54.8
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 3.5e-25 118.6 124 54.8
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 7.7e-25 117.5 128 57.0
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.7e-24 116.3 124 52.4
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 1.7e-24 116.3 126 57.1
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 2.9e-24 115.5 99 63.6
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 5.0e-24 114.8 121 60.3
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.2e-23 112.1 124 53.2
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 9.4e-23 110.5 149 48.3
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 9.4e-23 110.5 127 56.7
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 9.4e-23 110.5 130 56.2
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 2.1e-22 109.4 125 56.0
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 4.7e-22 108.2 124 57.3
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.4e-21 106.7 140 47.1
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 2.3e-21 105.9 133 51.1
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 4.0e-21 105.1 121 54.5
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 5.2e-21 104.8 131 48.9
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.2e-21 104.8 124 51.6
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 8.8e-21 104.0 135 52.6
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 2.0e-20 102.8 126 52.4
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 2.0e-20 102.8 126 52.4
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 2.6e-20 102.4 121 54.5
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.4e-20 101.7 124 50.0
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 4.4e-20 101.7 134 50.0
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 5.7e-20 101.3 110 57.3
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 7.4e-20 100.9 122 52.5
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 2.8e-19 99.0 137 51.1
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 3.7e-19 98.6 132 46.2
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 3.7e-19 98.6 137 49.6
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 1.4e-18 96.7 123 49.6
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 1.4e-18 96.7 134 50.0
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 3.1e-18 95.5 124 48.4
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 4.1e-18 95.1 141 43.3
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 5.3e-18 94.7 126 47.6
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 4.5e-17 91.7 145 44.1
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 1.3e-16 90.1 138 46.4
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 2.9e-16 89.0 135 45.9
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 1.5e-15 86.7 112 52.7
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 1.9e-15 86.3 142 47.2
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 2.1e-14 82.8 128 43.0
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 1.4e-13 80.1 109 53.2
FAN25G0828 Fragaria x ananassa HOM05D000531 ORTHO05D000877 1.8e-13 79.7 75 56.0
FAN25G2216 Fragaria x ananassa HOM05D000531 ORTHO05D000877 1.8e-13 79.7 75 56.0
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 1.8e-13 79.7 128 49.2
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 5.2e-13 78.2 116 38.8
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 2.6e-12 75.9 123 43.1
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 3.4e-12 75.5 127 40.9
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 1.7e-11 73.2 119 43.7
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 2.8e-11 72.4 135 40.0
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 2.8e-11 72.4 121 40.5
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 2.8e-11 72.4 94 50.0
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 4.8e-11 71.6 97 50.5
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 6.3e-11 71.2 94 51.1
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 8.3e-11 70.9 116 44.8
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 4.1e-10 68.6 140 37.9
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 4.1e-10 68.6 125 42.4
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 7.0e-10 67.8 117 39.3
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.2e-09 67.0 134 37.3
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 1.6e-09 66.6 100 42.0
Zm00001eb273730 Zea mays HOM05D007398 ORTHO05D004912 1.6e-09 66.6 135 40.7
Zm00001eb431260 Zea mays HOM05D007398 ORTHO05D004912 2.7e-09 65.9 141 35.5
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.5e-09 65.5 134 36.6
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 3.5e-09 65.5 138 37.0
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.5e-09 65.1 134 36.6
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 5.9e-09 64.7 114 39.5
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 7.7e-09 64.3 124 41.1
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 7.7e-09 64.3 121 38.0
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 1.3e-08 63.5 119 39.5
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 2.2e-08 62.8 104 39.4
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 2.2e-08 62.8 91 44.0
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 2.9e-08 62.4 126 39.7
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 2.9e-08 62.4 93 41.9
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 3.8e-08 62.0 122 37.7
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 3.8e-08 62.0 120 35.0
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 5.0e-08 61.6 126 34.9
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 5.0e-08 61.6 126 38.9
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 6.5e-08 61.2 105 41.9
Glyma.14G163600 Glycine max HOM05D011727 ORTHO05D004912 6.5e-08 61.2 96 44.8
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 8.5e-08 60.8 136 38.2
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 1.1e-07 60.5 126 33.3
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 1.5e-07 60.1 124 36.3
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 2.5e-07 59.3 104 36.5
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 2.5e-07 59.3 104 36.5
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 2.5e-07 59.3 106 40.6
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 2.5e-07 59.3 103 38.8
Os04g0624701 Oryza sativa ssp. japonica HOM05D007398 ORTHO05D004912 5.5e-07 58.2 121 37.2
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 5.5e-07 58.2 87 42.5
Glyma.13G082350 Glycine max HOM05D011727 ORTHO05D004912 7.2e-07 57.8 94 39.4
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 9.4e-07 57.4 124 37.1
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 2.1e-06 56.2 105 41.0
Medtr8g468960 Medicago truncatula HOM05D011727 ORTHO05D004912 2.1e-06 56.2 92 41.3
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 2.7e-06 55.8 100 41.0
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 4.7e-06 55.1 120 35.0
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 6.1e-06 54.7 105 36.2
FAN21G2105 Fragaria x ananassa HOM05D011727 ORTHO05D004912 6.1e-06 54.7 101 40.6
FAN25G2989 Fragaria x ananassa HOM05D011727 ORTHO05D004912 6.1e-06 54.7 101 40.6
ClCG03G014620 Citrullus lanatus HOM05D032147 ORTHO05D034646 8.0e-06 54.3 112 33.9
Lj1g0009560 Lotus japonicus HOM05D011727 ORTHO05D004912 8.0e-06 54.3 77 45.5


User provided reference genes

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