Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.3e-291 1005.7 543 100.0
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 4.2e-197 691.8 668 62.6
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 5.5e-149 531.9 678 49.4
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.6e-148 530.4 508 65.0
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 7.0e-144 515.0 677 48.2
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 5.9e-143 511.9 678 48.7
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.6e-140 502.7 678 47.9
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 6.8e-139 498.4 678 47.9
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 4.9e-137 492.3 535 52.5
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.1e-136 489.2 678 47.2
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.6e-135 487.3 535 52.7
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 2.4e-128 463.4 537 50.3
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 3.2e-120 436.4 546 47.1
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 2.4e-115 420.2 546 46.5
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 6.4e-113 412.1 533 48.2
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 3.2e-112 409.8 551 47.0
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.7e-110 404.1 478 49.8
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.4e-107 394.4 539 44.9
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 1.5e-106 391.0 562 45.6
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.3e-102 377.9 542 43.9
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 5.6e-101 372.5 321 70.4
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.3e-97 361.3 534 40.4
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 3.8e-97 359.8 532 42.9
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 4.2e-96 356.3 540 44.1
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 2.1e-95 354.0 534 40.1
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.0e-94 351.7 482 43.6
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 5.1e-94 349.4 534 41.6
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.5e-90 337.8 536 42.4
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 3.8e-89 333.2 532 40.2
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.2e-87 328.2 677 36.3
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 6.0e-87 325.9 523 41.5
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 6.0e-87 325.9 539 41.0
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.5e-85 321.2 676 36.8
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 4.3e-85 319.7 546 41.0
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 6.9e-83 312.4 539 40.4
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 5.0e-81 306.2 540 38.5
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.3e-78 298.1 537 39.9
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 4.8e-76 289.7 649 33.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 3.2e-72 276.9 610 32.8
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 4.3e-69 266.5 408 43.1
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 3.7e-68 263.5 467 36.6
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 6.3e-68 262.7 467 37.9
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 1.8e-67 261.2 471 38.9
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 2.0e-66 257.7 470 38.3
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 4.5e-66 256.5 472 37.5
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 7.7e-66 255.8 526 36.3
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 2.2e-65 254.2 589 33.8
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 2.9e-65 253.8 589 36.3
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 7.2e-64 249.2 520 35.8
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 9.4e-64 248.8 472 38.1
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 3.6e-63 246.9 589 33.1
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.7e-63 246.5 638 32.3
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 6.1e-63 246.1 483 36.6
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 7.9e-63 245.7 241 53.1
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.0e-62 245.4 560 35.4
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 5.1e-62 243.0 421 38.7
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 1.1e-61 241.9 612 32.4
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 3.3e-61 240.4 465 37.6
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 4.5e-58 229.9 416 35.3
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 5.9e-58 229.6 477 35.0
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 7.7e-58 229.2 255 50.2
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.3e-57 228.4 255 50.2
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.8e-57 226.9 433 35.1
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 6.5e-57 226.1 718 28.1
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 4.2e-56 223.4 471 35.9
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 5.5e-56 223.0 241 46.1
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 7.2e-56 222.6 391 38.1
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 2.7e-55 220.7 521 33.2
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 1.4e-54 218.4 169 74.0
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.3e-52 211.8 429 34.0
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.8e-52 210.7 542 34.1
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 6.3e-52 209.5 598 31.8
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 2.0e-50 204.5 602 32.2
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 4.5e-50 203.4 419 35.1
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 7.7e-50 202.6 413 34.1
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 2.9e-49 200.7 537 32.0
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 9.4e-48 195.7 537 31.8
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 4.7e-47 193.4 710 27.2
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 3.0e-46 190.7 591 30.5
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 4.0e-46 190.3 298 38.6
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 4.8e-44 183.3 703 30.4
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 9.1e-43 179.1 699 27.8
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 2.7e-42 177.6 634 30.8
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 3.8e-41 173.7 718 29.5
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 8.5e-41 172.6 697 28.6
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 3.2e-40 170.6 224 44.2
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 4.2e-40 170.2 750 26.1
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 5.5e-40 169.9 711 29.4
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 7.2e-40 169.5 459 31.2
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 9.4e-40 169.1 741 26.9
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 9.4e-40 169.1 560 29.8
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.1e-39 167.9 708 27.5
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 4.7e-39 166.8 708 27.4
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 8.0e-39 166.0 750 25.6
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.5e-37 161.8 248 38.7
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 2.6e-37 161.0 227 40.5
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 2.6e-37 161.0 726 26.2
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.8e-36 157.5 750 25.3
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.1e-35 155.6 248 39.1
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 1.8e-35 154.8 704 27.0
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.8e-35 154.8 316 34.5
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 5.4e-35 153.3 779 25.3
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 5.4e-35 153.3 636 29.1
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 7.0e-35 152.9 716 26.5
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 1.6e-34 151.8 704 26.8
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 3.5e-34 150.6 315 36.5
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 6.6e-33 146.4 403 30.5
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 2.5e-32 144.4 112 59.8
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 6.8e-30 136.3 501 30.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.2e-29 135.6 728 25.4
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.6e-29 134.4 485 29.5
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 4.4e-29 133.7 496 28.4
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.3e-28 132.1 326 30.7
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.9e-28 131.0 149 42.3
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.7e-28 130.6 356 29.8
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 7.8e-26 122.9 344 34.6
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 4.7e-23 113.6 541 26.6
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 6.2e-23 113.2 356 31.5
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.8e-22 111.7 391 28.4
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.8e-22 111.7 391 28.4
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.0e-22 110.5 532 27.1
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 9.2e-19 99.4 107 46.7
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 1.7e-17 95.1 294 29.3
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 5.6e-16 90.1 256 29.7
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 2.8e-15 87.8 106 45.3
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.6e-13 81.3 317 28.7
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.3e-12 79.0 317 28.4
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.7e-09 68.6 95 40.0
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 7.3e-08 63.2 132 35.6
SEGI_06248 Sequoiadendron giganteum HOM05D005385 ORTHO05D004652 5.2e-06 57.0 101 34.7


User provided reference genes

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