Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 3.0e-137 491.9 259 100.0
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.1e-102 377.1 259 74.9
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.9e-102 376.3 259 75.3
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 9.2e-102 374.0 259 74.5
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 3.5e-101 372.1 258 74.4
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.2e-98 363.6 259 76.1
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 7.8e-93 344.4 279 68.8
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 1.3e-92 343.6 215 87.4
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 2.3e-92 342.8 259 71.8
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 3.0e-92 342.4 259 71.0
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 5.1e-92 341.7 259 71.0
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 2.1e-90 336.3 259 71.0
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 2.4e-89 332.8 259 71.8
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 3.1e-89 332.4 262 67.6
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 3.4e-88 328.9 258 68.6
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 9.9e-88 327.4 260 67.7
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 2.9e-87 325.9 253 71.1
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 2.9e-87 325.9 258 67.8
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 8.4e-87 324.3 259 67.6
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 4.2e-86 322.0 264 65.5
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 7.1e-86 321.2 262 67.2
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 2.1e-85 319.7 261 64.4
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 2.1e-85 319.7 261 64.4
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 1.0e-84 317.4 259 66.4
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 1.3e-84 317.0 260 66.5
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.7e-84 316.6 260 66.5
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 2.3e-84 316.2 259 67.2
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 2.3e-84 316.2 256 66.8
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 3.0e-84 315.8 259 67.6
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 6.6e-84 314.7 259 64.5
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 6.6e-84 314.7 259 66.8
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 6.6e-84 314.7 259 66.8
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 1.1e-83 313.9 259 64.5
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 1.5e-83 313.5 259 64.1
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 3.3e-83 312.4 261 63.2
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 4.3e-83 312.0 260 62.7
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 1.3e-82 310.5 260 67.3
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 1.1e-81 307.4 259 66.4
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 1.4e-81 307.0 259 64.9
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 4.0e-81 305.4 259 62.9
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 6.9e-81 304.7 265 62.6
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 6.9e-81 304.7 270 62.2
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 1.2e-80 303.9 260 61.2
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 3.4e-80 302.4 257 62.6
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 1.3e-79 300.4 270 60.4
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 1.7e-79 300.1 258 66.3
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 2.9e-79 299.3 259 65.3
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 4.9e-79 298.5 259 62.9
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 6.4e-79 298.1 263 62.7
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 8.4e-79 297.7 259 64.1
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 1.1e-78 297.4 258 61.6
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 1.4e-78 297.0 270 59.6
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 5.4e-78 295.0 257 60.3
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 9.3e-78 294.3 257 61.9
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 1.2e-77 293.9 259 61.8
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 1.2e-77 293.9 261 61.7
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 1.6e-77 293.5 261 61.3
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 2.7e-77 292.7 286 58.4
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 4.6e-77 292.0 262 60.3
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 6.0e-77 291.6 261 61.3
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.3e-76 290.4 261 61.3
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.8e-76 290.0 262 61.8
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 1.8e-76 290.0 259 62.2
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 6.7e-76 288.1 257 60.3
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 8.7e-76 287.7 259 60.6
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 1.5e-75 287.0 268 59.7
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 2.5e-75 286.2 257 59.9
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 2.5e-75 286.2 259 60.6
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 4.3e-75 285.4 257 59.9
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 7.4e-75 284.6 261 57.5
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 9.6e-75 284.3 255 59.6
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 4.8e-74 282.0 266 57.5
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.1e-73 280.8 216 67.6
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 3.1e-73 279.3 258 58.9
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 5.3e-73 278.5 255 57.6
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.2e-72 277.3 256 59.4
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 1.5e-72 276.9 259 58.7
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 2.6e-72 276.2 262 58.4
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 3.4e-72 275.8 263 58.2
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 9.9e-72 274.2 282 55.0
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 2.2e-71 273.1 284 55.3
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 9.3e-70 267.7 259 56.8
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 1.2e-69 267.3 264 56.8
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 1.3e-68 263.8 259 55.2
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 1.8e-68 263.5 261 59.0
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 6.7e-68 261.5 259 60.2
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.5e-67 260.4 250 58.0
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 9.0e-65 251.1 258 53.5
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 1.2e-64 250.8 259 51.4
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.3e-63 247.3 260 53.8
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 7.1e-62 241.5 259 52.5
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 3.0e-60 236.1 304 45.1
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 3.0e-60 236.1 257 51.0
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 8.2e-58 228.0 195 65.6
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 2.5e-54 216.5 261 48.3
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 1.4e-49 200.7 251 48.2
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 7.7e-48 194.9 163 67.5
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 4.4e-43 179.1 163 54.6
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 1.4e-41 174.1 249 43.0
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 2.6e-40 169.9 172 54.7
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 1.8e-36 157.1 131 69.5
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 3.8e-31 139.4 146 60.3
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 6.5e-31 138.7 248 38.3
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 1.0e-28 131.3 247 37.7
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 7.5e-19 98.6 92 55.4
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 8.6e-15 85.1 64 60.9
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 5.5e-14 82.4 222 31.1
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 7.2e-14 82.0 222 31.5
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.9e-07 60.1 113 40.7
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 1.9e-06 57.4 106 34.9


User provided reference genes

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