Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 5.1e-54 214.2 108 100.0
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.3e-49 199.5 106 94.3
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 6.4e-49 197.2 107 91.6
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 8.4e-49 196.8 108 89.8
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.1e-48 196.4 107 89.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.1e-48 196.4 107 89.7
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.4e-48 196.1 107 89.7
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.4e-48 196.1 107 89.7
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.4e-48 196.1 107 89.7
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.4e-48 196.1 107 89.7
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 1.4e-48 196.1 107 91.6
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.4e-48 196.1 107 89.7
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.4e-48 196.1 106 92.5
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 2.4e-48 195.3 108 91.7
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 2.4e-48 195.3 107 90.7
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.4e-48 195.3 108 91.7
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 5.5e-48 194.1 104 92.3
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 5.5e-48 194.1 104 89.4
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.1e-48 193.7 107 89.7
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 7.1e-48 193.7 108 90.7
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 1.2e-47 193.0 107 88.8
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.6e-47 192.6 107 88.8
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.6e-47 192.6 106 90.6
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.6e-47 192.6 106 90.6
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 2.1e-47 192.2 108 88.9
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 2.1e-47 192.2 108 88.9
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 2.7e-47 191.8 107 86.0
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 3.5e-47 191.4 106 87.7
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 4.6e-47 191.0 106 89.6
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.6e-47 191.0 107 87.9
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 4.6e-47 191.0 106 89.6
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 4.6e-47 191.0 106 89.6
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 4.6e-47 191.0 107 87.9
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 4.6e-47 191.0 107 87.9
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 6.0e-47 190.7 107 87.9
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 6.0e-47 190.7 106 88.7
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.0e-46 189.9 104 89.4
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.3e-46 189.5 107 86.0
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.3e-46 189.5 109 89.9
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.8e-46 189.1 103 92.2
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 2.3e-46 188.7 107 86.9
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 2.3e-46 188.7 107 88.8
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 3.0e-46 188.3 107 86.9
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 3.9e-46 188.0 107 86.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 5.1e-46 187.6 104 89.4
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 5.1e-46 187.6 107 86.0
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 8.7e-46 186.8 106 84.9
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 8.7e-46 186.8 102 91.2
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.1e-45 186.4 103 90.3
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.9e-45 185.7 101 91.1
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.9e-45 185.7 106 84.0
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.9e-45 185.7 102 89.2
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.5e-45 185.3 107 85.0
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.5e-45 185.3 107 85.0
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.3e-45 184.9 107 85.0
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 3.3e-45 184.9 106 85.8
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 5.6e-45 184.1 107 86.0
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 5.6e-45 184.1 104 86.5
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 9.6e-45 183.3 99 89.9
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.3e-44 183.0 104 87.5
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.6e-44 182.6 107 84.1
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 2.1e-44 182.2 108 83.3
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.1e-44 182.2 106 84.0
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.8e-44 181.8 107 84.1
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 4.8e-44 181.0 107 84.1
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 4.8e-44 181.0 108 85.2
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 6.2e-44 180.6 100 85.0
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 6.2e-44 180.6 104 85.6
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 8.2e-44 180.3 106 83.0
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 79.4
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 8.2e-44 180.3 103 85.4
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 82.2
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 8.2e-44 180.3 104 84.6
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.1e-43 179.9 100 87.0
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.1e-43 179.9 107 84.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.4e-43 179.5 110 83.6
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 82.1
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 2.4e-43 178.7 107 80.4
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 3.1e-43 178.3 103 85.4
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.0e-43 177.9 106 82.1
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 5.3e-43 177.6 106 81.1
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 5.3e-43 177.6 103 84.5
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 5.3e-43 177.6 98 87.8
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 9.0e-43 176.8 106 81.1
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 2.0e-42 175.6 107 80.4
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 2.0e-42 175.6 106 80.2
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 2.0e-42 175.6 98 87.8
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 4.5e-42 174.5 107 79.4
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 5.8e-42 174.1 103 81.6
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 7.6e-42 173.7 106 80.2
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.0e-41 173.3 108 81.5
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.0e-41 173.3 98 85.7
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.3e-41 172.9 103 80.6
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.9e-41 171.8 99 83.8
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 6.5e-41 170.6 104 77.9
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 8.4e-41 170.2 98 82.7
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 8.4e-41 170.2 99 83.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 3.2e-40 168.3 104 76.9
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 9.3e-40 166.8 107 76.6
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.2e-39 166.4 107 77.6
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.2e-39 166.4 107 77.6
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 1.2e-39 166.4 107 76.6
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.6e-39 166.0 102 81.4
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 2.7e-39 165.2 108 75.0
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 3.5e-39 164.9 106 79.2
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 7.9e-39 163.7 107 74.8
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.0e-38 163.3 98 80.6
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.0e-38 163.3 106 75.5
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.8e-38 162.5 107 76.6
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 6.7e-38 160.6 107 76.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 8.7e-38 160.2 95 86.3
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 7.4e-37 157.1 98 77.6
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.8e-35 152.5 107 68.2
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 5.3e-35 151.0 107 67.3
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 5.3e-35 151.0 107 67.3
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 6.9e-35 150.6 107 68.2
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 6.9e-35 150.6 105 68.6
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 1.5e-34 149.4 107 66.4
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-34 149.4 107 66.4
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 1.5e-34 149.4 107 66.4
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 2.0e-34 149.1 107 66.4
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.6e-34 148.7 107 74.8
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 3.4e-34 148.3 107 68.2
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 5.9e-34 147.5 102 67.6
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 7.6e-34 147.1 107 66.4
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 2.9e-33 145.2 87 83.9
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-33 144.8 108 65.7
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-33 144.8 108 65.7
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 3.8e-33 144.8 108 65.7
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 3.8e-33 144.8 108 65.7
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 5.0e-33 144.4 106 63.2
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 8.5e-33 143.7 107 63.6
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.1e-32 143.3 107 62.6
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 4.2e-32 141.4 99 69.7
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 7.2e-32 140.6 103 66.0
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.2e-31 139.8 107 63.6
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 2.7e-31 138.7 108 69.4
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.6e-31 137.9 92 79.3
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 2.8e-28 128.6 66 93.9
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 3.1e-27 125.2 81 72.8
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.2e-26 123.2 98 59.2
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.0e-25 120.2 75 82.7
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 6.5e-25 117.5 83 68.7
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.4e-24 116.3 83 68.7
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.2e-24 115.2 65 86.2
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.2e-24 115.2 91 64.8
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 7.2e-24 114.0 93 62.4
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 2.1e-23 112.5 91 61.5
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 2.1e-23 112.5 97 60.8
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 3.6e-23 111.7 58 96.6
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.5e-21 106.3 88 60.2
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 7.4e-21 104.0 56 85.7
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.4e-19 99.8 56 83.9
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.6e-18 95.5 89 56.2
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 4.5e-18 94.7 107 51.4
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.0e-17 93.6 78 64.1
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 3.8e-17 91.7 59 83.1
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 4.2e-16 88.2 57 75.4
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 4.8e-12 74.7 86 47.7
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.0e-09 67.0 44 77.3
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 3.6e-07 58.5 83 41.0


User provided reference genes

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