Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 4.0e-215 751.1 374 100.0
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 4.2e-156 555.1 296 93.9
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 4.2e-156 555.1 296 93.9
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.7e-144 516.5 296 88.9
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.2e-144 516.2 302 86.4
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.2e-142 510.4 293 88.4
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 2.7e-142 509.2 299 87.3
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.5e-142 508.8 293 88.1
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 7.7e-142 507.7 301 85.4
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.2e-141 506.1 293 87.4
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.2e-140 501.9 307 84.4
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.2e-139 500.4 300 85.7
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 4.7e-139 498.4 302 83.8
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.8e-138 496.5 300 84.7
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.0e-138 495.7 302 84.1
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 5.2e-138 495.0 302 84.1
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.2e-137 493.8 302 83.4
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 3.4e-137 492.3 303 83.5
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 5.7e-137 491.5 300 84.7
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.1e-135 487.3 302 82.8
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.8e-135 486.5 302 81.8
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.1e-135 485.3 303 83.2
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.0e-134 483.0 303 82.8
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.5e-134 482.3 303 82.8
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.5e-134 481.9 302 83.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 6.6e-133 478.0 302 82.8
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 8.6e-133 477.6 296 82.4
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 2.5e-132 476.1 312 79.5
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.3e-132 475.7 302 81.8
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 3.3e-132 475.7 302 80.8
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 5.5e-132 474.9 302 80.8
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.2e-131 473.8 304 81.6
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.8e-130 469.9 303 78.9
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.7e-129 464.9 298 82.6
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.8e-128 462.6 302 80.1
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.8e-128 462.6 302 79.5
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.8e-128 462.6 298 81.2
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.1e-127 460.7 303 79.9
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.1e-127 459.1 298 82.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 3.1e-127 459.1 299 79.3
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 4.1e-127 458.8 297 80.5
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.0e-126 456.4 292 81.5
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.7e-126 456.1 305 80.3
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.7e-125 453.4 302 78.1
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.7e-125 453.4 289 80.3
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.3e-125 453.0 300 80.0
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.1e-124 450.7 300 78.7
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 1.5e-124 450.3 291 80.1
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.9e-124 449.9 300 78.7
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.9e-124 449.9 302 77.8
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 3.3e-124 449.1 297 77.8
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 4.3e-124 448.7 299 78.3
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 4.3e-124 448.7 294 78.6
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 9.5e-124 447.6 298 78.5
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 3.6e-123 445.7 293 80.5
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 1.0e-122 444.1 302 75.8
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.2e-122 441.8 291 79.0
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 8.9e-122 441.0 294 77.6
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 8.9e-122 441.0 301 76.4
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-121 440.7 294 76.9
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.5e-121 440.3 292 78.4
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.6e-121 439.5 292 78.4
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.6e-121 439.5 294 77.9
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 5.8e-121 438.3 274 81.0
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 5.8e-121 438.3 294 76.5
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 5.8e-121 438.3 274 81.0
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 7.5e-121 438.0 296 77.7
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 7.5e-121 438.0 304 77.0
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 1.3e-120 437.2 318 73.6
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 3.7e-120 435.6 318 73.6
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 6.4e-120 434.9 348 70.1
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.9e-119 433.3 303 77.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.2e-119 432.6 273 81.3
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 5.4e-119 431.8 296 75.7
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.0e-118 429.9 297 77.1
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.7e-118 429.5 274 80.3
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 3.5e-118 429.1 274 79.9
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.6e-118 428.7 298 75.5
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 4.6e-118 428.7 297 76.8
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.0e-117 427.6 299 75.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 1.0e-117 427.6 297 76.4
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.3e-117 427.2 285 78.9
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 2.3e-117 426.4 296 75.7
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 3.9e-117 425.6 287 78.7
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.6e-117 424.9 298 76.2
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 6.6e-117 424.9 297 74.4
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.5e-116 423.7 301 74.8
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 4.7e-115 418.7 256 84.4
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 8.0e-115 417.9 286 78.0
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-114 416.4 300 75.7
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.4e-113 412.5 256 82.4
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 3.4e-113 412.5 285 76.1
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 4.4e-113 412.1 299 72.9
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 4.4e-113 412.1 271 78.2
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 7.5e-113 411.4 271 77.9
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 7.5e-113 411.4 285 77.5
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.7e-112 410.2 291 76.3
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.9e-111 406.8 307 73.9
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 4.1e-111 405.6 300 71.3
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 5.4e-111 405.2 269 78.4
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.2e-110 404.1 294 73.1
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.6e-110 403.7 296 71.3
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.0e-109 401.0 245 85.3
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 3.3e-108 396.0 274 76.3
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 4.7e-107 392.1 315 68.6
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 4.0e-106 389.0 246 81.3
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 5.2e-106 388.7 247 80.6
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 6.8e-106 388.3 246 81.3
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.6e-105 386.3 262 80.5
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.7e-104 383.6 218 88.1
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 8.3e-104 381.3 247 81.0
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 3.2e-103 379.4 246 79.3
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 2.7e-102 376.3 305 68.2
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.7e-102 376.3 296 68.6
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 7.8e-102 374.8 254 76.4
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.2e-99 367.5 242 78.9
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.6e-97 359.8 296 66.9
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.2e-94 350.9 284 67.6
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.1e-94 350.1 289 66.4
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 9.6e-92 341.3 283 67.5
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 2.1e-91 340.1 224 79.9
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 3.1e-90 336.3 296 64.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.4e-89 332.8 214 79.9
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.1e-87 327.8 180 92.8
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 9.6e-84 314.7 236 72.9
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 9.6e-84 314.7 246 69.1
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.6e-83 313.9 179 86.6
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 2.0e-81 307.0 215 76.3
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 4.5e-81 305.8 256 65.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 7.1e-79 298.5 305 53.8
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.5e-78 296.2 324 51.2
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.1e-75 287.0 305 52.8
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 2.1e-75 287.0 257 64.2
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 4.5e-73 279.3 270 58.1
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 9.9e-73 278.1 231 64.5
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 1.1e-71 274.6 274 58.4
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.2e-70 271.2 179 74.9
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.1e-70 270.4 236 61.4
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 4.6e-70 269.2 257 63.0
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 6.0e-70 268.9 177 74.0
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.5e-65 252.7 163 77.9
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.9e-63 247.3 176 74.4
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 9.3e-63 245.0 139 87.8
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-61 241.1 207 64.7
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.5e-49 201.1 237 46.0
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.0e-49 200.7 158 69.0
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.0e-49 200.7 143 72.0
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 5.7e-44 182.6 120 82.5
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.2e-39 166.4 112 75.9
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.2e-31 140.2 82 84.1
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.6e-30 136.7 91 74.7
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 8.8e-29 132.1 81 79.0
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 9.7e-28 128.6 64 96.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 1.0e-21 108.6 66 86.4
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 2.4e-18 97.4 89 60.7
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.8e-14 84.0 110 52.7
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-11 74.7 53 69.8
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 3.7e-11 73.6 51 72.5
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.6e-06 58.2 66 53.0
BcaNung06412 Brassica carinata HOM05D004545 ORTHO05D095766 2.8e-06 57.4 116 38.8


User provided reference genes

Program Settings