Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 0.0e+00 1370.9 777 100.0
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 1.5e-304 1049.3 783 75.9
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 4.5e-277 958.0 785 71.7
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 3.0e-273 945.3 780 67.4
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 5.5e-267 924.5 787 65.6
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 9.4e-267 923.7 787 65.7
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.6e-264 915.6 794 64.4
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.4e-262 909.1 804 63.7
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.0e-260 903.7 802 63.5
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 4.4e-240 835.1 777 58.7
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.4e-238 829.3 783 57.7
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 1.0e-236 823.9 779 58.4
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.7e-236 823.2 785 58.0
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 4.2e-235 818.5 783 58.0
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 1.6e-234 816.6 785 57.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 3.6e-234 815.5 785 58.3
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 1.4e-233 813.5 784 57.9
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.3e-233 812.8 776 58.2
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.2e-230 802.4 783 56.6
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.6e-229 800.0 779 57.9
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.0e-228 795.0 783 56.3
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.0e-228 795.0 786 57.3
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.5e-227 793.5 783 56.7
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 3.4e-224 782.3 738 58.4
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 9.2e-222 774.2 787 55.3
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 2.3e-220 769.6 719 59.7
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.2e-218 763.8 766 55.0
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 3.1e-217 759.2 780 54.1
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 1.2e-216 757.3 788 55.7
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.2e-215 753.1 789 54.6
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 4.6e-213 745.3 759 54.9
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 6.0e-213 745.0 767 53.7
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 6.8e-209 731.5 785 51.2
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.2e-208 730.7 771 53.6
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 3.4e-208 729.2 742 54.4
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 3.4e-208 729.2 778 53.2
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 3.4e-208 729.2 787 51.2
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 5.8e-208 728.4 789 51.7
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 5.8e-208 728.4 782 52.3
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 2.2e-207 726.5 791 50.3
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 2.2e-207 726.5 779 53.7
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 3.5e-205 719.2 781 51.6
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 7.8e-205 718.0 780 52.1
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 3.0e-204 716.1 769 54.0
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 3.9e-204 715.7 782 53.2
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 5.1e-204 715.3 750 53.1
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 8.6e-204 714.5 705 56.3
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 7.3e-203 711.4 717 55.0
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 9.6e-203 711.1 780 53.2
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 1.6e-202 710.3 780 53.2
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.1e-202 709.9 771 53.6
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 8.1e-202 708.0 768 53.8
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.8e-201 706.8 768 53.6
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 2.4e-201 706.4 800 50.4
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 6.8e-201 704.9 799 50.4
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 4.4e-200 702.2 780 51.8
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 5.8e-200 701.8 783 53.9
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 2.4e-198 696.4 783 50.8
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 3.2e-198 696.0 738 52.7
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 4.2e-198 695.7 750 53.2
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 9.3e-198 694.5 768 53.8
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 4.6e-197 692.2 786 50.3
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.0e-196 691.0 779 51.9
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 1.7e-196 690.3 783 50.3
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 2.3e-196 689.9 789 49.8
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 3.0e-196 689.5 652 58.4
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 7.3e-195 684.9 801 49.7
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.6e-194 683.7 752 51.3
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 8.1e-194 681.4 741 51.8
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 4.0e-193 679.1 779 50.8
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 1.2e-192 677.6 725 53.2
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 2.6e-192 676.4 796 49.0
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 7.6e-192 674.9 715 54.4
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 6.4e-191 671.8 778 50.1
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 8.4e-191 671.4 778 50.6
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.4e-190 670.6 778 50.0
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.9e-190 670.2 749 51.7
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 4.2e-190 669.1 772 49.7
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 4.2e-190 669.1 764 50.7
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 5.4e-190 668.7 758 48.9
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 2.7e-189 666.4 778 50.3
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.3e-188 664.1 790 47.8
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.3e-188 663.3 791 49.1
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 7.3e-187 658.3 794 48.1
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 2.0e-184 650.2 787 50.8
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 4.5e-184 649.0 767 48.2
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.3e-183 647.5 793 48.9
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.7e-183 647.1 783 51.5
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.4e-182 644.0 801 48.6
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 2.4e-182 643.3 794 49.1
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-181 641.0 773 49.4
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 3.0e-180 636.3 787 47.4
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 3.9e-180 636.0 787 47.4
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 6.7e-180 635.2 787 47.3
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.9e-179 633.6 789 47.5
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 5.6e-179 632.1 791 47.8
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.7e-178 629.4 738 50.8
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 3.7e-178 629.4 754 50.0
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 4.8e-178 629.0 718 49.7
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 8.1e-178 628.2 753 49.0
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 1.1e-177 627.9 696 51.3
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.4e-177 626.7 767 49.0
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 3.4e-176 622.9 678 50.7
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 7.6e-176 621.7 765 48.4
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.7e-175 620.5 761 50.6
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 3.8e-175 619.4 794 46.9
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 8.4e-175 618.2 743 47.8
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.1e-174 617.8 763 47.7
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.2e-174 615.9 738 49.7
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.6e-170 604.0 685 53.0
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 3.7e-170 602.8 761 46.9
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 3.7e-170 602.8 773 48.3
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 6.2e-170 602.1 707 49.6
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.7e-165 586.6 587 56.6
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 2.7e-165 586.6 756 45.9
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 4.6e-165 585.9 779 45.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.7e-164 582.0 787 46.8
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 4.3e-163 579.3 768 45.6
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 2.8e-162 576.6 754 45.2
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.8e-161 573.9 765 45.8
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 6.9e-161 572.0 726 47.0
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 7.7e-160 568.5 780 47.3
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 3.2e-158 563.1 769 45.5
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 4.2e-158 562.8 753 44.8
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 4.3e-155 552.7 747 48.9
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 3.1e-153 546.6 781 44.3
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.0e-152 543.9 744 49.9
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.0e-148 531.6 554 55.4
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 4.4e-147 526.2 779 42.0
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.2e-146 523.9 612 47.9
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 6.7e-140 502.3 790 41.9
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 1.6e-133 481.1 764 41.8
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.3e-127 461.5 598 46.0
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.7e-127 461.1 504 51.2
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 5.0e-127 459.5 374 65.2
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.0e-124 451.8 610 44.8
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 4.4e-123 446.4 758 38.7
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.3e-106 391.7 734 37.3
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.2e-104 385.2 764 36.5
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.0e-103 382.1 746 37.0
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.0e-103 379.8 767 36.1
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 2.1e-101 374.4 751 35.7
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 9.8e-99 365.5 746 34.2
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.4e-97 360.9 765 35.2
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.9e-95 353.6 779 33.4
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 5.1e-95 353.2 805 32.4
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.9e-92 342.4 748 35.2
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 1.6e-85 321.6 751 32.8
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.4e-84 318.5 723 32.8
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 8.4e-82 309.3 736 32.5
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.6e-77 295.0 302 57.6
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.6e-77 295.0 328 48.2
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.4e-76 291.2 209 72.7
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.1e-76 290.8 210 73.3
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 7.6e-75 286.2 712 32.9
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 9.9e-75 285.8 586 34.3
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 2.2e-74 284.6 664 31.9
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.9e-70 271.6 614 34.5
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.0e-68 263.8 359 42.6
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 9.0e-60 236.1 341 39.0
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.8e-31 142.1 76 85.5
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.0e-31 141.4 286 37.4
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.1e-28 132.9 116 61.2
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 1.6e-24 119.0 183 42.6
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.4e-20 105.1 66 81.8
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 4.1e-20 104.4 62 79.0
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.5e-17 95.1 109 51.4
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 2.6e-14 85.1 166 38.0
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 1.4e-12 79.3 127 40.2
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.5e-09 69.3 54 63.0
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 4.2e-09 67.8 52 69.2
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.3e-07 62.0 60 51.7
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 2.3e-07 62.0 48 60.4


User provided reference genes

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