Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 0.0e+00 1164.1 565 100.0
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 1.3e-310 1068.9 564 90.2
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 2.7e-295 1018.1 566 85.9
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 1.5e-293 1012.3 600 81.7
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.6e-292 1008.8 563 84.9
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.0e-290 1001.9 563 84.4
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 8.0e-284 979.9 614 77.4
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 4.9e-281 970.7 537 85.1
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 1.5e-277 959.1 565 80.4
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 1.7e-273 945.7 563 79.8
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 2.0e-271 938.7 563 78.0
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 2.7e-271 938.3 563 78.2
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 6.0e-271 937.2 566 77.7
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 7.8e-271 936.8 566 77.4
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.7e-270 935.6 563 78.2
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 1.7e-270 935.6 570 78.8
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 7.3e-269 930.2 567 77.1
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 1.6e-268 929.1 566 76.7
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 2.3e-267 925.2 565 78.1
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 5.8e-266 920.6 524 83.4
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 1.7e-265 919.1 561 78.3
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 4.1e-264 914.4 568 77.6
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 4.1e-264 914.4 563 76.6
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 2.1e-263 912.1 566 77.0
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 1.4e-259 899.4 585 74.5
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 3.1e-259 898.3 565 76.5
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 1.4e-256 889.4 567 75.3
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 1.4e-256 889.4 564 74.3
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 4.1e-256 887.9 567 74.6
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.5e-253 878.6 564 73.8
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 2.9e-249 865.1 569 72.4
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 4.2e-248 861.3 564 72.7
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 2.1e-247 859.0 572 74.5
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 4.6e-247 857.8 565 73.6
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 8.7e-246 853.6 564 71.3
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 1.5e-245 852.8 564 71.3
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.5e-245 852.0 567 70.9
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 4.0e-243 844.7 564 71.1
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 1.5e-242 842.8 566 70.3
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 2.0e-242 842.4 564 70.7
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 1.7e-241 839.3 564 70.9
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 1.7e-241 839.3 565 70.3
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.7e-241 839.3 569 71.5
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 2.9e-241 838.6 564 70.7
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 5.4e-240 834.3 563 71.2
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 9.3e-240 833.6 561 71.8
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 1.6e-239 832.8 568 70.8
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 2.1e-239 832.4 568 70.8
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 3.5e-239 831.6 565 69.4
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 4.6e-239 831.2 572 70.3
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.1e-237 826.6 564 70.4
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.9e-237 825.9 564 70.7
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 3.3e-237 825.1 526 75.1
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 6.4e-233 810.8 565 69.7
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 3.2e-232 808.5 558 69.9
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.8e-230 802.7 591 67.7
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 8.7e-230 800.4 524 71.4
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 2.5e-229 798.9 562 69.0
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.5e-229 798.9 564 69.3
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 6.2e-228 794.3 572 66.6
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 6.2e-228 794.3 524 71.2
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 1.2e-226 790.0 569 66.3
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 5.8e-226 787.7 562 67.6
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 3.8e-225 785.0 569 66.4
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 1.4e-224 783.1 569 65.7
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 2.1e-223 779.2 559 68.0
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 7.9e-223 777.3 459 81.0
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 1.3e-220 770.0 563 67.3
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.4e-219 766.5 527 71.2
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 9.0e-219 763.8 522 70.3
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 4.5e-218 761.5 565 66.5
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 5.9e-218 761.1 504 71.0
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 3.8e-217 758.4 527 70.4
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 5.7e-213 744.6 527 68.5
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 2.4e-211 739.2 457 77.2
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 4.2e-208 728.4 493 73.4
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 6.1e-207 724.5 562 63.3
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 2.3e-206 722.6 459 74.9
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 9.1e-203 710.7 539 65.7
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 7.7e-202 707.6 684 55.4
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 9.4e-192 674.1 479 68.1
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 9.8e-181 637.5 567 56.1
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 4.8e-180 635.2 527 60.5
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.4e-179 633.6 527 60.3
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 7.2e-176 621.3 575 54.1
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 2.3e-174 616.3 595 55.5
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 8.8e-174 614.4 587 53.5
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 2.9e-169 599.4 481 62.8
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 2.3e-161 573.2 532 53.9
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 1.4e-158 563.9 402 67.2
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 9.6e-128 461.5 315 69.5
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 1.3e-127 461.1 710 39.3
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 4.0e-126 456.1 304 70.7
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 2.4e-123 446.8 340 62.9
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 3.5e-122 443.0 320 69.7
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 9.6e-120 434.9 322 66.8
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.9e-116 423.3 263 77.6
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 8.4e-116 421.8 285 67.4
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 7.9e-114 415.2 600 39.5
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 5.5e-107 392.5 266 69.9
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 2.7e-106 390.2 588 36.4
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 5.9e-101 372.5 270 66.3
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 6.5e-100 369.0 260 66.5
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 4.2e-99 366.3 262 67.6
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 1.4e-83 314.7 244 59.0
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 3.3e-80 303.5 207 69.1
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 4.7e-66 256.5 208 61.5
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 6.1e-66 256.1 187 62.0
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 8.0e-66 255.8 193 60.6
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.7e-63 248.1 140 74.3
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 2.2e-63 247.7 156 77.6
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 7.5e-56 222.6 142 75.4
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 1.8e-54 218.0 312 39.7
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 2.1e-50 204.5 185 55.7
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 3.7e-47 193.7 171 61.4
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 4.7e-42 176.8 168 55.4
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 9.5e-35 152.5 86 83.7
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 5.2e-33 146.7 94 67.0
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 6.0e-29 133.3 148 50.7
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 3.0e-20 104.4 115 43.5
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 1.4e-17 95.5 84 52.4
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 3.4e-16 90.9 50 78.0
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 5.1e-12 77.0 64 56.2
BcaB01g04050 Brassica carinata HOM05D006190 ORTHO05D008260 1.5e-08 65.5 61 49.2
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 9.9e-08 62.8 43 62.8
Psat5g200440 Pisum sativum HOM05D000228 ORTHO05D001545 8.4e-07 59.7 64 48.4
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 8.4e-07 59.7 122 37.7


User provided reference genes

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