Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 0.0e+00 1444.5 757 100.0
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 0.0e+00 1254.2 757 86.3
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 0.0e+00 1243.8 757 86.1
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 0.0e+00 1192.2 755 82.6
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 0.0e+00 1178.3 758 81.3
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 0.0e+00 1177.5 775 79.7
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 0.0e+00 1163.7 757 80.1
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 0.0e+00 1156.4 770 79.2
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.7e-305 1052.4 763 72.9
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 5.0e-305 1050.8 757 73.2
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 6.1e-303 1043.9 757 72.4
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 5.5e-296 1020.8 761 71.4
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.1e-291 1006.5 763 69.5
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.9e-288 995.7 743 71.1
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.9e-288 995.7 758 68.9
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.6e-287 992.6 758 67.8
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.0e-286 989.9 760 69.5
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 2.0e-285 985.7 757 69.1
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 2.6e-285 985.3 759 68.4
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 6.3e-284 980.7 774 66.9
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 1.6e-282 976.1 711 72.3
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 3.5e-282 974.9 756 67.1
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.0e-281 971.1 764 67.9
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.5e-280 969.5 756 66.8
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 4.7e-279 964.5 762 66.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 3.0e-278 961.8 714 71.4
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 5.2e-278 961.1 759 67.7
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 2.8e-276 955.3 758 66.0
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 2.7e-274 948.7 764 65.8
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 6.5e-273 944.1 758 65.4
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 4.0e-270 934.9 758 64.4
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 4.0e-270 934.9 755 67.5
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 3.4e-269 931.8 770 64.4
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 2.2e-268 929.1 736 66.8
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.2e-266 923.3 759 63.5
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 2.2e-265 919.1 801 62.4
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 2.9e-265 918.7 764 63.6
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.5e-264 915.6 758 63.5
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 7.2e-264 914.1 788 62.7
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 2.8e-263 912.1 734 65.4
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 4.7e-263 911.4 771 63.2
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 8.0e-263 910.6 757 63.9
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 1.2e-261 906.7 760 63.3
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.5e-261 906.4 756 63.1
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 9.8e-261 903.7 567 82.2
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 4.1e-259 898.3 760 62.9
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 7.8e-258 894.0 753 62.2
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.5e-256 889.8 758 62.4
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 3.3e-256 888.6 759 61.9
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.0e-254 883.6 759 61.9
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.8e-254 882.9 759 61.8
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 3.4e-253 878.6 759 61.5
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 6.4e-252 874.4 782 60.2
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 8.3e-252 874.0 761 60.6
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 1.1e-251 873.6 756 61.2
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.8e-251 872.8 753 60.6
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 5.4e-251 871.3 781 60.1
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 2.7e-250 869.0 761 59.5
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 3.0e-249 865.5 767 60.4
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 6.6e-249 864.4 759 60.1
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.4e-246 856.7 761 58.9
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 1.2e-245 853.6 757 58.3
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 3.4e-245 852.0 774 58.9
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 3.4e-245 852.0 764 59.6
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 3.4e-245 852.0 757 60.6
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 3.4e-245 852.0 687 65.6
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.3e-244 850.1 756 57.9
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 6.4e-244 847.8 765 59.5
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 6.4e-244 847.8 774 58.5
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 6.4e-244 847.8 781 57.7
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 2.0e-242 842.8 760 59.9
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 4.6e-242 841.6 756 60.4
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.1e-238 830.5 770 58.7
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.7e-236 823.2 754 59.8
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 3.7e-236 822.0 757 58.9
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.9e-235 819.7 758 60.3
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 5.1e-233 811.6 729 60.2
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.9e-232 809.7 796 55.3
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 1.9e-232 809.7 728 59.9
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.4e-229 798.9 741 59.1
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 4.9e-228 795.0 765 56.1
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 4.9e-228 795.0 570 72.3
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 3.9e-225 785.4 572 70.8
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.6e-223 780.0 754 55.6
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 3.8e-220 768.8 732 59.6
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 2.1e-218 763.1 735 60.0
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 7.8e-218 761.1 726 57.7
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 8.7e-217 757.7 755 53.8
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.4e-214 750.4 559 70.8
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.4e-214 750.4 559 70.7
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 6.4e-212 741.5 559 69.9
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 3.7e-207 725.7 758 51.7
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 7.6e-205 718.0 514 74.3
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 9.9e-205 717.6 580 63.6
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 2.2e-204 716.5 762 54.5
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 8.7e-201 704.5 567 66.0
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 5.6e-200 701.8 575 63.1
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 4.8e-199 698.7 637 60.1
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.0e-197 693.3 758 50.1
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 7.9e-194 681.4 754 51.6
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.8e-193 680.2 656 55.3
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 5.1e-193 678.7 740 50.8
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 4.1e-190 669.1 527 68.5
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 1.4e-182 644.0 531 63.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.9e-182 641.7 458 72.9
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 9.1e-182 641.3 756 49.6
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 2.9e-172 609.8 505 63.0
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 4.1e-158 562.8 616 49.7
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 4.5e-157 559.3 775 41.2
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.4e-150 535.8 523 54.5
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.0e-137 493.4 435 58.4
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 4.6e-133 479.6 478 54.6
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 2.5e-131 473.8 331 72.5
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 5.1e-124 449.5 562 48.8
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 2.0e-120 437.6 324 70.1
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 5.4e-110 402.9 285 72.6
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 3.5e-109 400.2 285 72.3
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 1.3e-103 381.7 381 54.9
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 2.2e-103 380.9 476 48.1
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 3.8e-103 380.2 819 30.9
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 6.0e-93 346.3 734 30.5
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 9.6e-91 339.0 283 61.8
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.4e-89 335.1 289 63.3
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.8e-89 334.7 218 77.1
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 6.4e-87 326.2 229 73.4
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.9e-83 314.7 756 29.8
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 2.1e-82 311.2 345 46.7
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 3.5e-77 293.9 177 84.2
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.1e-70 272.3 245 64.9
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.0e-63 249.2 221 57.9
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 1.7e-58 231.9 646 26.5
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 5.0e-55 220.3 191 59.2
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 6.1e-45 186.8 244 45.1
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.1e-45 186.8 418 34.0
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.0e-44 184.1 418 33.7
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.8e-41 175.3 140 69.3
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 4.5e-40 170.6 205 45.4
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 6.8e-36 156.8 112 75.9
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 9.8e-27 126.3 95 66.3
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.4e-25 121.7 80 73.8
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 3.2e-25 121.3 85 70.6
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 6.6e-23 113.6 137 47.4
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 4.7e-21 107.5 290 28.6
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-17 96.3 246 31.7
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.9e-17 95.5 76 61.8
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.9e-14 85.5 103 48.5
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.5e-14 85.1 68 58.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-12 78.2 105 37.1
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 3.5e-08 64.7 132 33.3
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 3.0e-07 61.6 182 24.7
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 3.0e-07 61.6 46 69.6
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 1.1e-06 59.7 70 47.1


User provided reference genes

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