Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 3.1e-162 575.1 298 100.0
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 6.4e-131 471.1 333 78.4
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 1.4e-101 373.6 312 67.6
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.1e-90 337.4 292 63.7
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.4e-76 289.3 293 58.0
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.4e-74 283.9 293 57.3
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.1e-71 274.2 291 54.6
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.4e-69 267.3 327 50.8
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 1.5e-68 263.8 303 51.8
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.6e-68 263.1 275 56.7
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 3.4e-68 262.7 303 51.2
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 5.9e-68 261.9 279 55.6
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 7.9e-65 251.5 289 52.2
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 7.4e-63 245.0 350 45.4
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 5.3e-61 238.8 312 48.4
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 6.5e-59 231.9 293 49.1
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.1e-58 231.1 293 48.1
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.2e-57 227.6 299 46.8
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 5.2e-56 222.2 291 44.3
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.5e-55 220.7 287 48.8
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.5e-55 220.7 287 48.8
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.3e-55 219.5 287 48.4
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 5.7e-55 218.8 364 42.0
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 9.7e-55 218.0 292 43.2
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 6.3e-54 215.3 309 46.3
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 8.2e-54 214.9 287 46.0
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 4.5e-52 209.1 385 39.2
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 7.7e-52 208.4 296 45.3
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 2.2e-51 206.8 320 41.6
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 3.2e-50 203.0 295 44.4
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 6.1e-49 198.7 333 41.7
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 6.3e-46 188.7 279 43.4
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 8.3e-46 188.3 303 42.6
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 1.1e-45 188.0 320 41.9
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 3.1e-45 186.4 333 38.7
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 1.2e-44 184.5 279 44.1
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 2.0e-44 183.7 296 41.6
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 2.0e-44 183.7 285 43.9
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 5.9e-44 182.2 324 41.0
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 1.1e-42 177.9 221 48.4
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.5e-42 177.6 307 39.1
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 1.9e-42 177.2 305 38.7
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 2.5e-42 176.8 285 42.1
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 1.6e-41 174.1 329 37.4
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 2.1e-41 173.7 286 42.0
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 2.1e-41 173.7 354 37.3
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 2.1e-41 173.7 325 37.2
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 2.7e-41 173.3 317 39.1
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 3.6e-41 172.9 330 36.7
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 3.6e-41 172.9 330 35.8
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.4e-40 171.0 326 35.6
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.8e-40 170.6 329 35.9
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 4.0e-40 169.5 297 38.7
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.7e-38 164.1 287 40.4
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 6.3e-38 162.2 215 48.4
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.8e-37 160.6 364 33.2
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 2.4e-37 160.2 353 34.6
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 5.4e-37 159.1 309 36.9
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 5.9e-36 155.6 297 35.7
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.0e-35 154.8 171 54.4
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 8.6e-35 151.8 189 50.8
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 1.9e-34 150.6 281 37.4
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 3.3e-34 149.8 336 34.2
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 2.8e-33 146.7 313 35.5
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 5.2e-32 142.5 278 37.4
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 4.4e-31 139.4 280 35.7
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 2.2e-30 137.1 207 43.0
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 3.7e-30 136.3 172 51.7
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 1.4e-29 134.4 298 34.6
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 3.2e-29 133.3 354 31.1
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 3.9e-27 126.3 287 35.9
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 8.6e-27 125.2 200 42.5
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 8.0e-25 118.6 296 32.8
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 4.0e-24 116.3 296 32.1
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 4.0e-24 116.3 296 32.1
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 5.2e-24 115.9 296 32.4
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 5.2e-24 115.9 149 44.3
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 2.0e-23 114.0 271 32.8
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 3.4e-23 113.2 304 33.2
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 5.8e-23 112.5 296 34.1
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 1.7e-22 110.9 296 31.4
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 2.2e-22 110.5 102 60.8
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 4.9e-22 109.4 117 54.7
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 8.3e-22 108.6 289 33.6
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.9e-21 107.5 303 31.0
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 2.4e-21 107.1 304 30.3
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.0e-20 104.0 294 32.3
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 3.5e-20 103.2 296 28.7
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 3.5e-20 103.2 164 41.5
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 1.1e-18 98.2 165 38.2
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 1.5e-18 97.8 103 53.4
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 3.3e-18 96.7 278 32.0
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 4.7e-17 92.8 221 34.4
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 2.3e-16 90.5 291 30.2
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 4.0e-16 89.7 296 27.0
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 8.9e-16 88.6 283 29.7
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 7.5e-15 85.5 290 31.7
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 1.7e-14 84.3 143 38.5
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 2.9e-14 83.6 290 30.0
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 2.9e-14 83.6 280 29.3
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 3.7e-14 83.2 280 31.4
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 1.9e-13 80.9 290 29.7
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 1.9e-13 80.9 287 27.9
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 5.4e-13 79.3 120 37.5
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 7.1e-13 79.0 99 48.5
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 9.2e-13 78.6 99 48.5
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 1.2e-12 78.2 290 29.7
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 1.6e-12 77.8 292 28.4
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.6e-12 77.8 125 37.6
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.6e-12 77.8 99 48.5
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 2.7e-12 77.0 290 29.3
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 2.7e-12 77.0 97 46.4
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 3.5e-12 76.6 113 43.4
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 3.9e-11 73.2 253 26.5
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 2.1e-09 67.4 117 35.0
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 2.8e-09 67.0 125 37.6
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 8.1e-09 65.5 135 34.8
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.1e-08 65.1 70 54.3
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.1e-08 65.1 374 22.2


User provided reference genes

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