Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 7.8e-45 183.3 87 100.0
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 5.1e-28 127.5 85 75.3
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 1.1e-25 119.8 85 71.8
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 2.3e-25 118.6 90 71.1
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 3.1e-25 118.2 85 70.6
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 1.5e-24 115.9 91 68.1
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.5e-24 115.9 91 68.1
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 2.6e-24 115.2 85 67.1
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 3.4e-24 114.8 85 68.2
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 4.4e-24 114.4 85 68.2
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.8e-24 114.0 85 68.2
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 5.8e-24 114.0 85 69.4
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 7.5e-24 113.6 85 68.2
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 7.5e-24 113.6 85 65.9
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 9.9e-24 113.2 85 64.7
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.7e-23 112.5 85 65.9
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.2e-23 112.1 85 67.1
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.2e-23 112.1 85 67.1
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 2.2e-23 112.1 85 67.1
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 2.9e-23 111.7 85 67.1
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 3.7e-23 111.3 85 65.9
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 3.7e-23 111.3 85 63.5
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 4.9e-23 110.9 86 62.8
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 4.9e-23 110.9 85 65.9
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 4.9e-23 110.9 85 67.1
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 4.9e-23 110.9 85 68.2
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 6.4e-23 110.5 85 67.1
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 6.4e-23 110.5 85 65.9
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 6.4e-23 110.5 85 67.1
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 6.4e-23 110.5 85 65.9
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 6.4e-23 110.5 85 65.9
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 6.4e-23 110.5 85 65.9
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 8.3e-23 110.2 85 65.9
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 8.3e-23 110.2 85 63.5
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 8.3e-23 110.2 85 64.7
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 8.3e-23 110.2 85 68.2
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 8.3e-23 110.2 85 68.2
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 8.3e-23 110.2 85 64.7
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 8.3e-23 110.2 85 65.9
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 8.3e-23 110.2 85 63.5
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 8.3e-23 110.2 85 65.9
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.1e-22 109.8 85 63.5
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 1.4e-22 109.4 85 63.5
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.4e-22 109.4 85 63.5
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 1.4e-22 109.4 85 65.9
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 1.9e-22 109.0 85 65.9
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.4e-22 108.6 85 65.9
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.2e-22 108.2 85 64.7
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 4.1e-22 107.8 85 62.4
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 4.1e-22 107.8 85 64.7
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 5.4e-22 107.5 85 60.0
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 5.4e-22 107.5 85 63.5
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 7.1e-22 107.1 85 64.7
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 7.1e-22 107.1 85 63.5
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 7.1e-22 107.1 85 64.7
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 7.1e-22 107.1 85 65.9
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 7.1e-22 107.1 85 62.4
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 7.1e-22 107.1 85 65.9
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 9.2e-22 106.7 85 64.7
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 9.2e-22 106.7 85 61.2
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 9.2e-22 106.7 85 62.4
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 9.2e-22 106.7 85 61.2
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 9.2e-22 106.7 85 61.2
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 9.2e-22 106.7 85 61.2
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 9.2e-22 106.7 85 61.2
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.2e-21 106.3 85 65.9
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.2e-21 106.3 85 63.5
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 1.6e-21 105.9 85 61.2
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 2.1e-21 105.5 85 61.2
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.1e-21 105.5 85 61.2
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 2.7e-21 105.1 85 61.2
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 2.7e-21 105.1 85 63.5
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 2.7e-21 105.1 85 64.7
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.5e-21 104.8 85 61.2
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.5e-21 104.8 85 61.2
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 3.5e-21 104.8 85 63.5
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 4.6e-21 104.4 85 62.4
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 6.0e-21 104.0 85 60.0
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 7.8e-21 103.6 86 60.5
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 1.0e-20 103.2 85 60.0
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 1.0e-20 103.2 85 60.0
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 1.0e-20 103.2 85 60.0
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 1.0e-20 103.2 85 62.4
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.0e-20 103.2 85 62.4
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.0e-20 103.2 85 63.5
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 1.3e-20 102.8 85 62.4
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 1.7e-20 102.4 85 58.8
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.3e-20 102.1 85 57.6
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 3.0e-20 101.7 88 61.4
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 3.9e-20 101.3 85 58.8
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 3.9e-20 101.3 85 57.6
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 3.9e-20 101.3 85 58.8
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 5.1e-20 100.9 85 58.8
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 6.6e-20 100.5 85 61.2
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 8.6e-20 100.1 100 52.0
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 1.9e-19 99.0 85 57.6
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 2.5e-19 98.6 85 61.2
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 1.2e-18 96.3 87 59.8
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.8e-18 95.1 85 56.5
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 8.1e-18 93.6 83 59.0
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 4.0e-17 91.3 85 58.8
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.0e-16 89.0 54 79.6
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 2.6e-16 88.6 84 56.0
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 2.6e-16 88.6 54 77.8
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 4.4e-16 87.8 85 54.1
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 7.6e-16 87.0 85 56.5
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 9.9e-16 86.7 85 50.6
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 2.2e-15 85.5 85 50.6
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 3.8e-15 84.7 54 75.9
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.8e-15 84.7 86 50.0
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 4.9e-15 84.3 56 71.4
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 4.9e-15 84.3 87 48.3
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.4e-14 82.8 86 48.8
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 4.2e-14 81.3 57 64.9
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 9.2e-14 80.1 85 55.3
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 9.2e-14 80.1 54 66.7
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 4.6e-13 77.8 85 51.8
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.0e-12 76.6 77 49.4
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.3e-12 76.3 85 50.6
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.3e-12 76.3 85 50.6
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.3e-12 75.5 79 46.8
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-11 72.8 85 51.8
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.9e-11 72.4 51 60.8
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 2.5e-11 72.0 79 49.4
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 5.6e-11 70.9 41 82.9
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 2.8e-10 68.6 50 56.0
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 2.4e-09 65.5 82 39.0
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 3.1e-09 65.1 42 71.4
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 9.0e-09 63.5 85 44.7
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.4e-08 61.6 56 58.9
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 5.8e-08 60.8 44 65.9
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 8.4e-07 57.0 85 40.0
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 1.4e-06 56.2 33 78.8
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.4e-06 56.2 56 53.6


User provided reference genes

Program Settings