Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 0.0e+00 1218.4 606 100.0
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 5.2e-289 997.3 583 86.1
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.0e-288 995.3 583 85.4
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.4e-286 988.4 584 84.9
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.4e-286 988.4 584 84.9
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.2e-285 986.1 583 85.1
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 1.0e-284 983.0 584 84.6
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 7.8e-277 956.8 568 83.5
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 2.0e-272 942.2 576 80.9
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 5.8e-272 940.6 578 81.8
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.1e-270 936.4 567 81.0
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 1.9e-270 935.6 578 80.8
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 2.1e-269 932.2 576 80.6
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 3.0e-268 928.3 568 80.5
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 8.6e-268 926.8 563 81.3
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 4.3e-267 924.5 573 79.9
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 9.9e-264 913.3 567 79.9
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 2.2e-263 912.1 577 77.6
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.9e-263 911.0 579 80.7
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 2.7e-261 905.2 575 78.3
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 3.5e-261 904.8 579 75.6
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 4.6e-261 904.4 577 77.6
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 1.3e-260 902.9 577 76.4
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 3.0e-260 901.7 576 77.4
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 3.9e-260 901.4 579 77.9
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 1.1e-259 899.8 577 77.1
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 2.8e-258 895.2 588 75.9
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 9.0e-257 890.2 575 76.3
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 4.4e-256 887.9 564 77.7
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 2.2e-255 885.6 590 74.4
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 2.2e-255 885.6 565 77.5
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 4.9e-255 884.4 569 77.3
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 6.4e-255 884.0 565 77.2
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 6.4e-255 884.0 565 77.2
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 8.4e-255 883.6 569 76.8
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 3.2e-254 881.7 572 75.2
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 3.2e-254 881.7 563 78.7
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.6e-253 879.4 574 74.0
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 1.6e-253 879.4 565 77.3
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 6.0e-253 877.5 574 76.1
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 7.8e-253 877.1 604 72.4
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 1.0e-252 876.7 565 77.0
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 1.7e-252 875.9 583 75.0
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 6.6e-252 874.0 574 74.0
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 8.7e-252 873.6 588 73.6
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.5e-251 872.8 574 76.1
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 7.3e-251 870.5 574 74.9
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 2.1e-250 869.0 615 71.9
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.8e-250 868.6 578 73.2
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 2.8e-250 868.6 561 77.4
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 3.6e-250 868.2 601 72.2
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 4.8e-250 867.8 572 74.1
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 8.1e-250 867.1 618 70.9
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 9.0e-249 863.6 579 72.0
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 9.9e-248 860.1 566 74.9
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 1.3e-247 859.8 575 75.5
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 8.4e-247 857.1 574 73.7
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 6.0e-245 850.9 560 74.6
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 7.9e-245 850.5 570 73.7
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 1.9e-243 845.9 574 74.7
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 4.8e-242 841.3 577 72.4
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 8.1e-242 840.5 558 74.4
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 2.4e-241 839.0 579 71.5
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 9.0e-241 837.0 579 72.0
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 2.0e-240 835.9 571 71.8
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 3.4e-240 835.1 573 71.9
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 5.8e-240 834.3 572 71.5
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 1.0e-239 833.6 563 73.2
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 1.3e-239 833.2 578 72.7
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 1.7e-239 832.8 578 70.6
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 2.2e-239 832.4 579 71.7
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.4e-238 829.7 560 72.7
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 1.9e-238 829.3 566 73.5
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 2.7e-237 825.5 566 72.3
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 1.6e-234 816.2 560 72.3
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 3.4e-232 808.5 573 71.7
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 3.8e-231 805.1 617 66.6
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 6.5e-231 804.3 566 71.2
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 5.5e-222 774.6 466 82.6
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 8.8e-220 767.3 460 82.6
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 5.9e-208 728.0 468 76.5
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 1.3e-207 726.9 560 66.4
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 2.9e-207 725.7 580 64.5
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.4e-204 716.8 641 58.3
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 6.7e-204 714.5 569 64.3
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 1.9e-198 696.4 606 62.7
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 5.7e-195 684.9 429 80.2
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 4.5e-192 675.2 408 81.4
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.0e-188 662.1 414 79.0
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 3.5e-184 649.0 628 55.1
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 2.5e-182 642.9 416 76.0
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.2e-176 624.0 607 53.9
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.2e-176 624.0 607 53.9
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 4.3e-174 615.5 416 73.1
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 3.6e-173 612.5 403 76.4
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.1e-169 599.0 415 72.8
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 2.1e-165 586.6 400 74.0
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 4.9e-162 575.5 426 68.1
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 1.1e-153 547.7 548 52.6
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.3e-141 507.7 313 78.9
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 3.6e-141 506.1 304 80.3
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 9.6e-126 454.9 561 45.6
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 4.9e-122 442.6 313 68.7
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 1.2e-115 421.4 657 38.7
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 2.0e-107 394.0 239 84.1
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.0e-87 328.6 197 83.2
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.0e-79 300.1 539 37.5
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 4.7e-72 276.6 162 84.0
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 4.4e-70 270.0 416 39.2
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.3e-61 241.9 151 76.8
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 5.6e-57 226.5 136 76.5
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 2.8e-56 224.2 133 80.5
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 4.4e-54 216.9 175 64.0
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 1.5e-49 201.8 104 91.3
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 5.4e-44 183.3 154 62.3
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 1.5e-41 175.3 110 80.0
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.2e-32 145.6 179 48.0
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 3.1e-23 114.4 67 77.6
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 2.8e-16 91.3 604 22.7
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.1e-15 89.4 54 72.2
Sabra09G0122600 Salix brachista HOM05D000563 ORTHO05D000536 1.2e-06 59.3 68 42.6
Cre03.g179650 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 1.5e-06 58.9 139 28.1
Potri.001G184200 Populus trichocarpa HOM05D000563 ORTHO05D000536 3.4e-06 57.8 68 41.2
Potri.009G156500 Populus trichocarpa HOM05D000563 ORTHO05D000536 3.4e-06 57.8 68 41.2
Pp3c11_17010 Physcomitrium patens HOM05D002203 ORTHO05D002647 1.0e-05 56.2 90 32.2


User provided reference genes

Program Settings