Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 3.9e-63 244.6 119 100.0
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.1e-44 183.3 123 78.0
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 4.9e-42 174.5 119 77.3
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 3.3e-38 161.8 121 77.7
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.3e-34 149.8 120 72.5
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 6.5e-34 147.5 120 71.7
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 7.1e-33 144.1 119 69.7
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 9.3e-33 143.7 119 66.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.1e-30 136.7 112 70.5
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 3.3e-30 135.2 120 63.3
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 9.6e-30 133.7 123 63.4
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.3e-29 133.3 119 63.9
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.6e-29 132.9 118 62.7
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.8e-29 132.1 119 58.8
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.7e-29 131.7 120 63.3
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.8e-29 131.3 119 60.5
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 8.2e-29 130.6 122 61.5
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 8.2e-29 130.6 119 59.7
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.4e-28 129.8 130 58.5
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.8e-28 129.4 119 62.2
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 9.0e-28 127.1 120 60.0
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 9.0e-28 127.1 122 56.6
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 9.0e-28 127.1 119 58.0
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 9.0e-28 127.1 119 58.0
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.2e-27 126.7 123 57.7
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 2.0e-27 125.9 120 56.7
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 2.0e-27 125.9 120 56.7
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.4e-27 125.2 119 56.3
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.6e-27 124.0 120 59.2
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.6e-27 124.0 120 59.2
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 7.6e-27 124.0 120 59.2
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.3e-26 123.2 119 56.3
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.7e-26 122.9 123 57.7
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 3.8e-26 121.7 119 58.8
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.5e-26 120.9 126 56.3
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.5e-26 120.9 126 56.3
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 8.4e-26 120.6 119 54.6
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.1e-25 120.2 115 56.5
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 4.2e-25 118.2 115 60.0
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.6e-24 116.3 122 57.4
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.6e-24 116.3 122 57.4
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.1e-24 115.9 120 55.8
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 2.3e-23 112.5 119 55.5
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 3.9e-23 111.7 120 51.7
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-22 110.2 117 56.4
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.1e-22 110.2 121 54.5
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.5e-22 109.8 115 59.1
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.5e-22 109.0 120 51.7
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.5e-22 109.0 120 51.7
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.5e-22 109.0 121 53.7
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.5e-22 109.0 121 53.7
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 3.3e-22 108.6 119 52.9
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 5.7e-22 107.8 119 54.6
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 3.7e-21 105.1 119 50.4
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 4.8e-21 104.8 120 55.8
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 4.8e-21 104.8 119 49.6
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.8e-21 104.8 119 50.4
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 4.8e-21 104.8 119 50.4
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 6.3e-21 104.4 119 50.4
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 8.2e-21 104.0 121 50.4
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.1e-20 103.6 119 49.6
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.4e-20 103.2 120 46.7
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.4e-20 103.2 107 57.0
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 1.8e-20 102.8 119 50.4
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.4e-20 102.4 119 49.6
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 5.3e-20 101.3 117 54.7
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 5.3e-20 101.3 119 48.7
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 1.2e-19 100.1 105 51.4
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 2.6e-19 99.0 122 49.2
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 3.4e-19 98.6 109 52.3
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 4.5e-19 98.2 119 49.6
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 5.9e-19 97.8 116 49.1
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.0e-18 97.1 120 47.5
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 2.2e-18 95.9 119 47.1
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 3.8e-18 95.1 119 44.5
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 3.8e-18 95.1 117 47.9
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 5.0e-18 94.7 122 49.2
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 6.5e-18 94.4 120 48.3
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 1.4e-17 93.2 97 59.8
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.4e-17 93.2 120 49.2
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.9e-17 92.8 121 46.3
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 2.5e-17 92.4 114 46.5
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 3.2e-17 92.0 121 45.5
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 4.2e-17 91.7 123 43.9
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.5e-17 91.3 113 44.2
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.5e-17 91.3 122 43.4
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 5.5e-17 91.3 122 42.6
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 7.2e-17 90.9 122 43.4
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 9.4e-17 90.5 123 43.9
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 9.4e-17 90.5 123 43.9
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 9.4e-17 90.5 119 46.2
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 9.4e-17 90.5 109 45.0
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.6e-16 89.7 119 43.7
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.6e-16 89.7 117 47.0
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.1e-16 89.4 104 51.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.7e-16 89.0 123 43.1
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.7e-16 89.0 119 44.5
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 3.6e-16 88.6 107 56.1
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 3.6e-16 88.6 81 63.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 3.6e-16 88.6 118 43.2
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 3.6e-16 88.6 122 43.4
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 4.6e-16 88.2 105 48.6
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 6.1e-16 87.8 123 43.1
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 6.1e-16 87.8 104 48.1
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 7.9e-16 87.4 123 41.5
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-15 86.7 110 43.6
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.0e-15 85.5 120 43.3
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 3.0e-15 85.5 105 46.7
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 3.9e-15 85.1 119 42.9
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.9e-15 85.1 122 42.6
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 3.9e-15 85.1 104 50.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.8e-15 84.0 115 41.7
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 8.8e-15 84.0 114 46.5
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.1e-14 83.6 107 43.0
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.1e-14 83.6 119 40.3
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.1e-14 83.6 123 42.3
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.5e-14 83.2 119 42.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 7.4e-14 80.9 119 42.0
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 7.4e-14 80.9 120 42.5
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.2e-13 79.3 122 40.2
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 3.7e-13 78.6 122 38.5
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 4.8e-13 78.2 119 40.3
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 6.3e-13 77.8 119 39.5
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 6.3e-13 77.8 119 40.3
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 6.3e-13 77.8 119 40.3
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 8.2e-13 77.4 119 40.3
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 8.2e-13 77.4 119 40.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.8e-12 76.3 107 43.9
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.1e-12 75.1 112 38.4
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 5.3e-12 74.7 110 42.7
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 6.9e-12 74.3 119 38.7
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.2e-11 73.6 119 39.5
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.2e-11 73.6 105 42.9
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 7.7e-11 70.9 113 37.2
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.3e-10 70.1 103 38.8
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.2e-10 69.3 109 40.4
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 2.2e-10 69.3 114 37.7
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 2.9e-10 68.9 121 37.2
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 2.1e-08 62.8 120 37.5
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.7e-08 62.4 99 41.4
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 3.6e-08 62.0 91 38.5
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 7.9e-08 60.8 104 35.6
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 7.9e-08 60.8 106 41.5
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 5.1e-07 58.2 130 35.4


User provided reference genes

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