Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 1.1e-66 256.5 132 100.0
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 8.7e-32 140.6 136 62.5
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 4.3e-31 138.3 136 62.5
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 1.7e-30 136.3 136 61.8
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 2.7e-25 119.0 133 53.4
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 4.7e-25 118.2 132 54.5
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 4.4e-23 111.7 133 51.1
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 9.7e-23 110.5 139 46.0
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 1.8e-21 106.3 141 51.8
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.1e-21 105.1 132 51.5
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 9.1e-21 104.0 133 50.4
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 9.1e-21 104.0 133 50.4
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.5e-20 103.2 133 50.4
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.5e-20 103.2 133 50.4
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.7e-20 100.9 133 48.9
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.2e-19 99.4 142 45.1
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 5.0e-19 98.2 136 49.3
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 1.1e-18 97.1 143 46.2
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.9e-18 96.3 139 48.2
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 7.2e-18 94.4 133 45.9
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 7.2e-18 94.4 134 47.0
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 1.2e-17 93.6 132 47.7
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.6e-17 92.0 134 45.5
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.6e-17 92.0 134 45.5
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 4.7e-17 91.7 133 43.6
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 5.2e-16 88.2 133 45.1
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 6.7e-16 87.8 139 46.0
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 6.7e-16 87.8 137 44.5
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 8.8e-16 87.4 143 46.9
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 1.1e-15 87.0 138 47.8
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.0e-15 86.3 133 44.4
Sed0008787 Sechium edule HOM05D004793 ORTHO05D004423 4.4e-15 85.1 136 47.8
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 5.7e-15 84.7 138 44.9
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 5.7e-15 84.7 133 43.6
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 9.7e-15 84.0 134 42.5
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 1.3e-14 83.6 138 48.6
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 2.2e-14 82.8 138 46.4
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.7e-14 82.0 132 42.4
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 6.3e-14 81.3 135 46.7
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 8.2e-14 80.9 135 45.2
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.4e-13 79.3 134 37.3
ClCG02G002720 Citrullus lanatus HOM05D000222 ORTHO05D003997 1.6e-12 76.6 117 47.0
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 1.6e-12 76.6 141 44.7
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 1.6e-12 76.6 137 42.3
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.0e-12 76.3 134 39.6
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.5e-12 75.5 134 41.0
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 7.7e-12 74.3 136 40.4
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 7.7e-12 74.3 136 41.2
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 1.0e-11 73.9 153 37.3
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.7e-11 73.2 134 41.8
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 2.2e-11 72.8 133 40.6
Lsat_1_v5_gn_5_121620 Lactuca sativa HOM05D004793 ORTHO05D004423 2.9e-11 72.4 138 38.4
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 2.9e-11 72.4 139 45.3
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 2.9e-11 72.4 133 41.4
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 2.9e-11 72.4 133 41.4
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 2.9e-11 72.4 144 38.9
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 2.9e-11 72.4 133 36.8
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 5.0e-11 71.6 141 41.1
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.5e-11 71.2 154 39.6
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 6.5e-11 71.2 147 40.8
MELO3C024110.2 Cucumis melo HOM05D004793 ORTHO05D004423 8.5e-11 70.9 138 42.0
CsaV3_7G023710 Cucumis sativus L. HOM05D004793 ORTHO05D004423 8.5e-11 70.9 94 48.9
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 8.5e-11 70.9 145 40.7
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 8.5e-11 70.9 144 42.4
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 8.5e-11 70.9 161 36.6
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 8.5e-11 70.9 135 42.2
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.1e-10 70.5 146 41.8
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 1.1e-10 70.5 136 40.4
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.9e-10 69.7 137 42.3
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.5e-10 69.3 140 39.3
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 5.5e-10 68.2 132 38.6
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 5.5e-10 68.2 132 37.1
Haze_12687 Corylus avellana HOM05D004793 ORTHO05D004423 5.5e-10 68.2 142 40.8
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.5e-10 68.2 140 38.6
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 5.5e-10 68.2 138 39.1
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.2e-10 67.8 135 40.7
Gohir.A07G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.2e-09 67.0 134 41.8
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 1.2e-09 67.0 144 39.6
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 1.6e-09 66.6 149 39.6
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 1.6e-09 66.6 144 38.9
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.1e-09 66.2 142 35.9
Gorai.001G099200 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.6e-09 65.5 134 41.0
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 6.1e-09 64.7 130 40.0
Gohir.D07G092600 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.1e-09 64.7 134 41.0
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 8.0e-09 64.3 130 39.2
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.0e-08 63.9 160 38.1
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.8e-08 63.2 138 34.8
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 1.8e-08 63.2 130 39.2
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.8e-08 63.2 130 39.2
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.8e-08 63.2 130 39.2
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.8e-08 63.2 130 39.2
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 1.8e-08 63.2 161 35.4
DCAR_019706 Daucus carota HOM05D004793 ORTHO05D004423 2.3e-08 62.8 139 35.3
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.3e-08 62.8 138 40.6
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 2.3e-08 62.8 146 37.0
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 3.0e-08 62.4 143 37.8
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 3.0e-08 62.4 143 37.8
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 4.0e-08 62.0 133 39.1
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 5.2e-08 61.6 150 40.0
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 6.7e-08 61.2 135 37.0
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 1.2e-07 60.5 134 40.3
SalBow7G3719 Salvia bowleyana HOM05D004793 ORTHO05D004423 1.2e-07 60.5 134 36.6
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.5e-07 60.1 138 37.7
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.0e-07 59.7 143 34.3
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.6e-07 59.3 136 40.4
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 2.6e-07 59.3 149 37.6
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.3e-07 58.9 104 36.5
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 4.4e-07 58.5 103 41.7
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 5.7e-07 58.2 138 38.4
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 5.7e-07 58.2 156 35.9
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 5.7e-07 58.2 155 37.4
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 5.7e-07 58.2 87 44.8
CAN.G294.21 Capsicum annuum HOM05D004793 ORTHO05D004423 7.5e-07 57.8 139 35.3
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 7.5e-07 57.8 131 35.1
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 7.5e-07 57.8 131 35.1
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 7.5e-07 57.8 139 36.0
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 9.7e-07 57.4 133 34.6
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 1.3e-06 57.0 130 35.4
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 1.3e-06 57.0 133 36.8
MSTRG.6642 Avicennia marina HOM05D004793 ORTHO05D004423 1.7e-06 56.6 134 35.1
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.7e-06 56.6 146 39.0
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 2.2e-06 56.2 146 37.7
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.2e-06 56.2 133 36.1
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.2e-06 56.2 133 34.6
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.2e-06 56.2 133 34.6
CAN.G1397.7 Capsicum annuum HOM05D037802 ORTHO05D004423 3.7e-06 55.5 138 35.5
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 4.8e-06 55.1 162 33.3
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 4.8e-06 55.1 139 35.3
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.8e-06 55.1 44 68.2
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 8.2e-06 54.3 129 35.7


User provided reference genes

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