Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G197600 Prunus persica HOM05D007442 ORTHO05D009284 4.0e-60 234.6 118 100.0
MD17G1116900 Malus domestica HOM05D007442 ORTHO05D009284 5.4e-49 197.6 120 87.5
FAN05G2406 Fragaria x ananassa HOM05D007442 ORTHO05D009284 6.6e-47 190.7 118 83.1
FvH4_6g40630 Fragaria vesca HOM05D007442 ORTHO05D009284 1.1e-46 189.9 118 83.1
FAN02G0623 Fragaria x ananassa HOM05D007442 ORTHO05D009284 1.1e-46 189.9 118 83.1
FAN14G4407 Fragaria x ananassa HOM05D007442 ORTHO05D009284 1.1e-46 189.9 118 83.1
FAN09G1668 Fragaria x ananassa HOM05D007442 ORTHO05D009284 5.6e-46 187.6 118 82.2
RcHm_v2.0_Chr2g0156001 Rosa chinensis HOM05D007442 ORTHO05D009284 1.4e-44 183.0 118 82.2
QL04p068504 Quercus lobata HOM05D007442 ORTHO05D009284 8.3e-42 173.7 118 76.3
GSVIVG01030083001 Vitis vinifera HOM05D007442 ORTHO05D009284 8.3e-42 173.7 122 77.9
Dinv21296 Davidia involucrata HOM05D007442 ORTHO05D009284 2.4e-41 172.2 120 74.2
CANSAT80G0988 Cannabis sativa HOM05D007442 ORTHO05D009284 7.1e-41 170.6 119 75.6
Potri.014G167300 Populus trichocarpa HOM05D007442 ORTHO05D009284 7.1e-41 170.6 119 74.8
Dinv26606 Davidia involucrata HOM05D007442 ORTHO05D009284 2.7e-40 168.7 119 73.9
Cfa014227 Carpinus fangiana HOM05D007442 ORTHO05D009284 8.6e-39 163.7 118 72.9
Gohir.D07G198200 Gossypium hirsutum HOM05D007442 ORTHO05D009284 1.1e-38 163.3 122 72.1
Gorai.001G221800 Gossypium raimondii HOM05D007442 ORTHO05D009284 1.1e-38 163.3 122 72.1
Actinidia35204 Actinidia chinensis HOM05D007442 ORTHO05D009284 2.5e-38 162.2 119 68.1
Manes.12G065601 Manihot esculenta HOM05D007442 ORTHO05D009284 2.5e-38 162.2 123 70.7
VMungo0647G0872 Vigna mungo HOM05D007442 ORTHO05D009284 4.3e-38 161.4 118 71.2
Gohir.A07G191900 Gossypium hirsutum HOM05D007442 ORTHO05D009284 5.6e-38 161.0 122 71.3
Thecc.01G195900 Theobroma cacao HOM05D007442 ORTHO05D009284 1.2e-37 159.8 123 70.7
CiPaw.03G281600 Carya illinoinensis HOM05D007442 ORTHO05D009284 1.6e-37 159.5 111 76.6
Lsat_1_v5_gn_7_96821 Lactuca sativa HOM05D007442 ORTHO05D009284 2.8e-37 158.7 124 66.9
ClCG02G009230 Citrullus lanatus HOM05D007442 ORTHO05D009284 8.1e-37 157.1 122 70.5
Sabra14G0127300 Salix brachista HOM05D007442 ORTHO05D009284 8.1e-37 157.1 120 69.2
Haze_12630 Corylus avellana HOM05D007442 ORTHO05D009284 1.1e-36 156.8 114 72.8
Sed0005163 Sechium edule HOM05D007442 ORTHO05D009284 1.4e-36 156.4 126 68.3
Phvul.008G289000 Phaseolus vulgaris HOM05D007442 ORTHO05D009284 1.8e-36 156.0 118 70.3
TWI36G1704 Tripterygium wilfordii HOM05D007442 ORTHO05D009284 1.8e-36 156.0 120 70.8
Solyc05g024430.3 Solanum lycopersicum HOM05D007442 ORTHO05D009284 5.2e-36 154.5 95 75.8
PGSC0003DMG400018833 Solanum tuberosum HOM05D007442 ORTHO05D009284 5.2e-36 154.5 95 75.8
Lj8A135T99 Lonicera japonica HOM05D007442 ORTHO05D009284 6.8e-36 154.1 128 65.6
Glyma.02G308900 Glycine max HOM05D007442 ORTHO05D009284 8.9e-36 153.7 123 68.3
Sp3g23760 Schrenkiella parvula HOM05D007442 ORTHO05D009284 1.5e-35 152.9 108 70.4
Sed0010901 Sechium edule HOM05D007442 ORTHO05D009284 2.0e-35 152.5 119 69.7
AL3G42820 Arabidopsis lyrata HOM05D007442 ORTHO05D009284 2.6e-35 152.1 126 64.3
CSS0032520 Camellia sinensis var. sinensis HOM05D007442 ORTHO05D009284 2.6e-35 152.1 119 66.4
Nitab4.5_0002154g0020 Nicotiana tabacum HOM05D007442 ORTHO05D009284 2.6e-35 152.1 120 70.0
C05p43360 Brassica napus HOM05D007442 ORTHO05D009284 3.4e-35 151.8 125 65.6
CsaV3_6G009590 Cucumis sativus L. HOM05D007442 ORTHO05D009284 3.4e-35 151.8 124 70.2
Thhalv10002726m.g Eutrema salsugineum HOM05D007442 ORTHO05D009284 3.4e-35 151.8 129 63.6
Nitab4.5_0000006g0670 Nicotiana tabacum HOM05D007442 ORTHO05D009284 3.4e-35 151.8 120 69.2
Peaxi162Scf00147g01918 Petunia axillaris HOM05D007442 ORTHO05D009284 3.4e-35 151.8 120 68.3
Eucgr.H00878 Eucalyptus grandis HOM05D007442 ORTHO05D009284 5.8e-35 151.0 111 70.3
Sopen05g019430 Solanum pennellii HOM05D007442 ORTHO05D009284 5.8e-35 151.0 95 73.7
THA.LOC104826628 Tarenaya hassleriana HOM05D007442 ORTHO05D009284 7.6e-35 150.6 123 66.7
BcaB06g26827 Brassica carinata HOM05D007442 ORTHO05D009284 9.9e-35 150.2 125 64.8
BraA07t28440Z Brassica rapa HOM05D007442 ORTHO05D009284 9.9e-35 150.2 125 65.6
TWI18G1416 Tripterygium wilfordii HOM05D007442 ORTHO05D009284 9.9e-35 150.2 102 78.4
arahy.Tifrunner.gnm1.ann1.C8HW3T Arachis hypogaea HOM05D007442 ORTHO05D009284 1.3e-34 149.8 124 68.5
Carub.0003s2673 Capsella rubella HOM05D007442 ORTHO05D009284 1.3e-34 149.8 99 73.7
arahy.Tifrunner.gnm1.ann1.8YE7LP Arachis hypogaea HOM05D007442 ORTHO05D009284 1.7e-34 149.4 123 67.5
BcaC06g35915 Brassica carinata HOM05D007442 ORTHO05D009284 1.7e-34 149.4 125 64.8
BolC7t41415H Brassica oleracea HOM05D007442 ORTHO05D009284 1.7e-34 149.4 125 64.8
Nn1g07499 Nelumbo nucifera HOM05D007442 ORTHO05D009284 2.9e-34 148.7 130 60.8
AT4G13500 Arabidopsis thaliana HOM05D007442 ORTHO05D009284 4.9e-34 147.9 126 63.5
Medtr5g098530 Medicago truncatula HOM05D007442 ORTHO05D009284 8.4e-34 147.1 119 68.9
Oeu064352.1 Olea europaea HOM05D007442 ORTHO05D009284 8.4e-34 147.1 119 69.7
Cc00_g11580 Coffea canephora HOM05D007442 ORTHO05D009284 1.1e-33 146.7 120 66.7
LjContig00081g0000923 Lotus japonicus HOM05D007442 ORTHO05D009284 1.1e-33 146.7 121 66.9
C07p09770 Brassica napus HOM05D007442 ORTHO05D009284 2.4e-33 145.6 125 64.0
SGA_v2.0_scaffold49G18406 Striga asiatica HOM05D007442 ORTHO05D009284 3.2e-33 145.2 122 63.9
TPR.G35906 Trifolium pratense HOM05D007442 ORTHO05D009284 4.1e-33 144.8 114 68.4
PSO302G0215 Papaver somniferum HOM05D007442 ORTHO05D009284 5.4e-33 144.4 119 64.7
MSTRG.12248 Avicennia marina HOM05D007442 ORTHO05D009284 9.2e-33 143.7 88 77.3
PGR083G2291 Punica granatum HOM05D007442 ORTHO05D009284 9.2e-33 143.7 126 65.1
Sc06g0009910 Simmondsia chinensis HOM05D007442 ORTHO05D009284 9.2e-33 143.7 120 64.2
Duzib138G0628 Durio zibethinus HOM05D007442 ORTHO05D009284 1.2e-32 143.3 121 65.3
DCAR_021093 Daucus carota HOM05D007442 ORTHO05D009284 1.6e-32 142.9 121 64.5
PSO210G6456 Papaver somniferum HOM05D007442 ORTHO05D009284 2.7e-32 142.1 119 63.9
Ciclev10017197m.g Citrus clementina HOM05D007442 ORTHO05D009284 4.6e-32 141.4 124 61.3
HanXRQChr11g0329011 Helianthus annuus HOM05D007442 ORTHO05D009284 1.0e-31 140.2 114 65.8
ECA236G2600 Erigeron canadensis HOM05D007442 ORTHO05D009284 1.3e-31 139.8 125 60.0
Duzib211G0040 Durio zibethinus HOM05D007442 ORTHO05D009284 3.9e-31 138.3 127 62.2
MD09G1126600 Malus domestica HOM05D007442 ORTHO05D009284 3.9e-31 138.3 74 90.5
EL10Ac9g22680 Beta vulgaris HOM05D007442 ORTHO05D009284 5.1e-31 137.9 117 63.2
Atru.BG.34.p Acer truncatum HOM05D007442 ORTHO05D009284 7.3e-30 134.0 69 87.0
Zm00001eb049770 Zea mays HOM05D007442 ORTHO05D009284 2.1e-29 132.5 117 59.8
Psat2g002440 Pisum sativum HOM05D007442 ORTHO05D009284 2.8e-29 132.1 73 86.3
Aa31LG5G16680 Aethionema arabicum HOM05D001040 ORTHO05D002795 6.2e-29 131.0 116 62.1
Os03g0595300 Oryza sativa ssp. japonica HOM05D007442 ORTHO05D009284 6.2e-29 131.0 79 83.5
TAR629G1602 Trochodendron aralioides HOM05D007442 ORTHO05D009284 8.1e-29 130.6 67 89.6
Migut.H01284 Erythranthe guttata HOM05D007442 ORTHO05D009284 2.4e-28 129.0 115 63.5
Glyma.14G004000 Glycine max HOM05D007442 ORTHO05D009284 5.2e-28 127.9 123 60.2
unitig_62.g23255 Utricularia gibba HOM05D007442 ORTHO05D009284 6.9e-28 127.5 129 59.7
vmacro09481 Vaccinium macrocarpon HOM05D007442 ORTHO05D009284 5.8e-27 124.4 162 45.7
SEGI_21691 Sequoiadendron giganteum HOM05D007442 ORTHO05D009284 4.9e-26 121.3 116 58.6
Lalb_Chr04g0247091 Lupinus albus HOM05D007442 ORTHO05D009284 1.1e-25 120.2 123 55.3
CDE04G1945 Ceratophyllum demersum HOM05D007442 ORTHO05D009284 1.3e-23 113.2 72 76.4
Mapoly0072s0101 Marchantia polymorpha HOM05D007442 ORTHO05D009284 1.3e-23 113.2 71 70.4
SMO364G0127 Selaginella moellendorffii HOM05D007442 ORTHO05D009284 2.5e-22 109.0 70 68.6
MBI16_g07768_MAGBIO Magnolia biondii HOM05D007442 ORTHO05D009284 9.0e-20 100.5 48 97.9
Rhsim04G0028000 Rhododendron simsii HOM05D000264 ORTHO05D009284 1.2e-19 100.1 112 55.4
CARHR103090 Cardamine hirsuta HOM05D007442 ORTHO05D009284 3.4e-19 98.6 49 89.8
Pp3c21_15030 Physcomitrium patens HOM05D007442 ORTHO05D009284 7.9e-16 87.4 70 57.1
AagrBONN_evm.TU.Sc2ySwM_368.44 Anthoceros agrestis HOM05D007442 ORTHO05D009284 3.0e-15 85.5 104 45.2
Cre03.g151200 Chlamydomonas reinhardtii HOM05D007442 ORTHO05D009284 2.6e-11 72.4 101 41.6
COL.COLO4_33329 Corchorus olitorius HOM05D007442 ORTHO05D009284 3.2e-09 65.5 76 51.3
CSS0040675 Camellia sinensis var. sinensis HOM05D007442 ORTHO05D009284 1.0e-07 60.5 71 50.7
MELO3C025961.2 Cucumis melo HOM05D007442 ORTHO05D009284 2.5e-06 55.8 76 52.6
Atru.chr6.3394 Acer truncatum HOM05D007442 ORTHO05D009284 4.3e-06 55.1 77 49.4
AT2G05310 Arabidopsis thaliana HOM05D007442 ORTHO05D009284 4.3e-06 55.1 78 48.7


User provided reference genes

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