Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 1.0e-123 446.8 231 100.0
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 1.2e-71 273.9 231 69.3
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 2.9e-70 269.2 234 68.4
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 2.3e-64 249.6 244 61.9
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.0e-63 246.5 244 60.2
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.1e-61 238.8 244 58.6
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.2e-61 237.7 244 59.0
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 1.2e-60 237.3 240 58.3
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.1e-58 230.7 240 57.5
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 1.1e-50 204.1 230 53.9
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 5.2e-48 195.3 219 52.5
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 2.2e-46 189.9 222 50.5
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.1e-45 187.6 222 53.2
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.9e-45 186.8 248 47.6
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 5.4e-45 185.3 222 53.2
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 4.6e-44 182.2 222 52.7
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 5.1e-43 178.7 230 49.1
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 2.1e-41 173.3 230 44.8
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.0e-35 154.5 243 44.0
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 3.9e-35 152.5 225 43.6
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.1e-34 151.0 199 45.7
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 3.3e-34 149.4 194 45.4
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 3.3e-34 149.4 232 44.4
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 2.8e-33 146.4 192 45.8
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 6.2e-33 145.2 117 62.4
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 8.1e-33 144.8 237 40.9
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 8.1e-33 144.8 237 40.5
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 8.1e-33 144.8 237 40.5
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 2.4e-32 143.3 185 46.5
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 3.1e-32 142.9 185 45.9
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 5.8e-31 138.7 209 40.2
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 2.9e-30 136.3 140 55.0
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 3.8e-30 136.0 149 51.7
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 4.9e-30 135.6 225 44.9
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 1.0e-27 127.9 205 40.0
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 1.8e-27 127.1 183 41.5
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 2.3e-27 126.7 124 54.8
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 2.5e-26 123.2 183 41.0
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 3.3e-26 122.9 233 39.1
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 3.3e-26 122.9 183 41.0
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.7e-25 119.4 213 39.4
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 1.1e-24 117.9 188 43.1
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 2.0e-23 113.6 75 66.7
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 7.6e-23 111.7 212 36.3
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 1.1e-21 107.8 164 39.0
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 2.8e-17 93.2 180 37.2
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 4.0e-16 89.4 79 49.4
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 6.9e-16 88.6 73 53.4
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 1.2e-15 87.8 99 44.4
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 1.0e-14 84.7 73 49.3
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.3e-14 84.3 103 42.7
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 2.9e-14 83.2 72 52.8
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 4.9e-14 82.4 72 48.6
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 8.4e-14 81.6 118 37.3
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.4e-13 80.9 117 39.3
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 1.9e-13 80.5 181 33.1
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 2.5e-13 80.1 74 48.6
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 2.5e-13 80.1 191 33.0
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 2.5e-13 80.1 95 41.1
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 3.2e-13 79.7 100 41.0
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 4.2e-13 79.3 219 30.6
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 5.5e-13 79.0 122 38.5
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 7.1e-13 78.6 77 45.5
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 9.3e-13 78.2 74 45.9
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 9.3e-13 78.2 79 41.8
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 1.2e-12 77.8 103 39.8
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 1.6e-12 77.4 77 42.9
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.6e-12 77.4 88 40.9
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.1e-12 77.0 72 51.4
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 2.7e-12 76.6 72 50.0
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 3.5e-12 76.3 118 36.4
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 3.5e-12 76.3 128 35.2
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 4.6e-12 75.9 98 35.7
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 4.6e-12 75.9 78 44.9
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 6.0e-12 75.5 78 44.9
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 6.0e-12 75.5 76 46.1
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 6.0e-12 75.5 71 45.1
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 6.0e-12 75.5 71 45.1
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 6.0e-12 75.5 78 44.9
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 6.0e-12 75.5 111 36.0
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 7.9e-12 75.1 72 48.6
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 7.9e-12 75.1 116 35.3
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 1.0e-11 74.7 71 50.7
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 1.0e-11 74.7 76 44.7
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 1.8e-11 73.9 68 50.0
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.8e-11 73.9 181 29.8
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 2.3e-11 73.6 98 39.8
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 2.3e-11 73.6 71 43.7
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.3e-11 73.6 75 44.0
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 2.3e-11 73.6 71 45.1
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 3.0e-11 73.2 70 48.6
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 3.9e-11 72.8 100 41.0
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 3.9e-11 72.8 99 38.4
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 6.7e-11 72.0 102 40.2
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 8.7e-11 71.6 80 41.2
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.1e-10 71.2 71 42.3
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 1.1e-10 71.2 73 41.1
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 1.5e-10 70.9 216 29.2
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.9e-10 70.5 180 28.9
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 4.3e-10 69.3 217 30.0
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 4.3e-10 69.3 104 37.5
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 4.3e-10 69.3 103 37.9
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 5.7e-10 68.9 197 31.5
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 5.7e-10 68.9 104 37.5
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 7.4e-10 68.6 214 29.9
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 1.6e-09 67.4 108 32.4
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 1.6e-09 67.4 162 34.6
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 2.2e-09 67.0 105 33.3
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 2.8e-09 66.6 101 36.6
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 3.7e-09 66.2 157 28.7
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 3.7e-09 66.2 105 34.3
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 6.3e-09 65.5 74 44.6
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 8.2e-09 65.1 68 48.5
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 1.4e-08 64.3 207 29.0
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 1.4e-08 64.3 171 33.3
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 1.8e-08 63.9 82 42.7
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 1.8e-08 63.9 71 40.8
FAN15G3354 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.8e-08 63.9 68 42.6
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 1.8e-08 63.9 69 44.9
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 2.4e-08 63.5 88 40.9
Prupe.8G203000 Prunus persica HOM05D007028 ORTHO05D003658 2.4e-08 63.5 102 38.2
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 3.1e-08 63.2 61 37.7
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 3.1e-08 63.2 205 28.3
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 5.3e-08 62.4 212 25.9
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 5.3e-08 62.4 77 40.3
Nitab4.5_0003312g0020 Nicotiana tabacum HOM05D007028 ORTHO05D003658 6.9e-08 62.0 84 39.3
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 6.9e-08 62.0 71 43.7
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 9.0e-08 61.6 70 41.4
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 9.0e-08 61.6 77 42.9
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 9.0e-08 61.6 192 29.7
Lsat_1_v5_gn_8_3220 Lactuca sativa HOM05D007028 ORTHO05D003658 9.0e-08 61.6 73 38.4
Nitab4.5_0000045g0190 Nicotiana tabacum HOM05D007028 ORTHO05D003658 9.0e-08 61.6 104 37.5
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 9.0e-08 61.6 94 29.8
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 1.2e-07 61.2 210 30.5
FvH4_2g19050 Fragaria vesca HOM05D007028 ORTHO05D003658 1.2e-07 61.2 119 31.1
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 1.2e-07 61.2 99 39.4
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 1.2e-07 61.2 185 29.2
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 1.2e-07 61.2 195 29.7
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 1.5e-07 60.8 68 47.1
ATR0215G032 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.0e-07 60.5 102 35.3
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 2.0e-07 60.5 71 40.8
ECA238G1648 Erigeron canadensis HOM05D007028 ORTHO05D003658 2.0e-07 60.5 115 34.8
Migut.N00615 Erythranthe guttata HOM05D007028 ORTHO05D003658 2.0e-07 60.5 75 38.7
FAN27G2710 Fragaria x ananassa HOM05D007028 ORTHO05D003658 2.0e-07 60.5 116 31.0
Manes.09G183300 Manihot esculenta HOM05D007028 ORTHO05D003658 2.6e-07 60.1 95 35.8
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 3.4e-07 59.7 73 41.1
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 3.4e-07 59.7 70 41.4
Cpa.g.sc8.155 Carica papaya HOM05D007028 ORTHO05D003658 4.5e-07 59.3 118 34.7
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 4.5e-07 59.3 199 28.6
FAN24G0765 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.5e-07 59.3 116 31.0
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 5.9e-07 58.9 104 33.7
Hma1.2p1_0226F.1_g095710 Hydrangea macrophylla HOM05D007028 ORTHO05D003658 5.9e-07 58.9 68 44.1
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 5.9e-07 58.9 201 28.4
VMungo1383G2132 Vigna mungo HOM05D007028 ORTHO05D003658 5.9e-07 58.9 111 32.4
Ciclev10013422m.g Citrus clementina HOM05D007028 ORTHO05D003658 7.7e-07 58.5 68 42.6
Glyma.19G251200 Glycine max HOM05D007028 ORTHO05D003658 7.7e-07 58.5 129 33.3
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 7.7e-07 58.5 118 33.1
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 1.0e-06 58.2 215 29.8
MD10G1164400 Malus domestica HOM05D007028 ORTHO05D003658 1.0e-06 58.2 100 33.0
Lsat_1_v5_gn_9_12301 Lactuca sativa HOM05D007028 ORTHO05D003658 1.3e-06 57.8 99 37.4
TPR.G23292 Trifolium pratense HOM05D007028 ORTHO05D003658 1.3e-06 57.8 71 39.4
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 1.3e-06 57.8 75 42.7
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 1.7e-06 57.4 68 42.6
Manes.12G044800 Manihot esculenta HOM05D007028 ORTHO05D003658 1.7e-06 57.4 83 41.0
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 1.7e-06 57.4 75 41.3
MD05G1175300 Malus domestica HOM05D007028 ORTHO05D003658 2.9e-06 56.6 68 36.8
Psat5g168520 Pisum sativum HOM05D007028 ORTHO05D003658 2.9e-06 56.6 82 35.4
TAR633G1987 Trochodendron aralioides HOM05D007028 ORTHO05D003658 2.9e-06 56.6 93 33.3
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 3.8e-06 56.2 236 25.4
DCAR_005532 Daucus carota HOM05D007028 ORTHO05D003658 5.0e-06 55.8 75 40.0
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 5.0e-06 55.8 85 41.2
Eucgr.H01353 Eucalyptus grandis HOM05D007028 ORTHO05D003658 5.0e-06 55.8 71 39.4
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 8.5e-06 55.1 111 32.4


User provided reference genes

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