Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 4.1e-168 594.7 320 100.0
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 4.6e-111 405.2 332 70.5
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 1.1e-96 357.5 330 63.6
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 3.6e-95 352.4 325 63.7
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 3.6e-95 352.4 320 64.4
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 6.1e-95 351.7 327 62.7
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 5.1e-94 348.6 321 65.1
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 1.1e-93 347.4 331 64.0
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 5.7e-93 345.1 321 64.2
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.8e-92 342.8 324 63.0
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 1.1e-91 340.9 331 63.4
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 2.4e-91 339.7 325 64.0
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 8.5e-89 331.3 321 60.7
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 2.5e-88 329.7 319 61.8
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 2.1e-87 326.6 321 62.3
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.7e-87 326.2 304 62.2
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.7e-87 326.2 321 62.3
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 7.9e-87 324.7 270 66.3
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 1.0e-86 324.3 327 60.2
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 1.4e-86 323.9 323 60.1
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 3.0e-86 322.8 324 63.0
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 3.0e-86 322.8 281 65.1
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 1.1e-85 320.9 322 59.0
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 1.5e-85 320.5 306 63.1
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.5e-85 320.5 306 62.7
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 3.3e-85 319.3 306 62.7
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 7.4e-85 318.2 327 59.6
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 1.7e-84 317.0 320 62.8
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 1.1e-83 314.3 320 57.8
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 2.4e-83 313.2 326 57.4
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 6.9e-83 311.6 322 58.4
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 6.9e-83 311.6 331 56.8
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 2.0e-82 310.1 340 56.8
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 4.5e-82 308.9 338 56.8
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 4.5e-82 308.9 323 58.2
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 5.0e-81 305.4 306 60.1
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 1.1e-80 304.3 342 55.0
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 1.9e-80 303.5 321 56.1
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.2e-80 302.8 344 56.7
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 3.2e-80 302.8 306 59.8
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 4.2e-80 302.4 344 54.7
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 5.5e-80 302.0 306 59.2
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 9.4e-80 301.2 328 57.9
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 1.2e-79 300.8 306 59.2
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 1.6e-79 300.4 245 71.4
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 2.1e-79 300.1 343 57.4
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 7.9e-79 298.1 307 59.3
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 1.0e-78 297.7 334 55.7
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 1.4e-78 297.4 325 56.0
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 8.8e-78 294.7 329 56.2
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 3.3e-77 292.7 333 55.0
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 3.3e-77 292.7 309 59.5
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 4.4e-77 292.4 350 55.1
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 1.3e-76 290.8 341 52.8
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 6.3e-76 288.5 335 57.3
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 1.1e-75 287.7 496 42.7
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 2.4e-75 286.6 305 57.0
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 3.1e-75 286.2 336 54.2
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 3.1e-75 286.2 322 58.1
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 5.3e-75 285.4 219 71.2
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 3.5e-74 282.7 327 54.7
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 5.9e-74 282.0 324 54.9
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 1.0e-73 281.2 321 54.5
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 1.3e-73 280.8 326 54.3
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 2.2e-73 280.0 334 53.9
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 5.0e-73 278.9 277 59.6
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 5.0e-73 278.9 347 53.6
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 6.5e-73 278.5 342 52.9
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 8.5e-73 278.1 322 54.0
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 1.1e-72 277.7 355 52.4
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 5.5e-72 275.4 337 54.9
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 7.2e-72 275.0 323 54.5
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 1.2e-71 274.2 322 54.0
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 6.1e-71 271.9 356 51.1
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 6.1e-71 271.9 317 54.3
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 8.0e-71 271.6 331 54.4
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 1.0e-70 271.2 352 50.6
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 2.3e-70 270.0 354 49.7
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 4.4e-69 265.8 328 52.1
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 4.4e-69 265.8 361 49.3
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 5.7e-69 265.4 356 51.1
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 7.5e-69 265.0 303 54.8
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 7.5e-69 265.0 338 52.1
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 4.8e-68 262.3 330 51.2
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 1.1e-67 261.2 335 51.9
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 5.3e-67 258.8 304 53.6
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 7.0e-67 258.5 330 52.7
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 2.0e-66 256.9 246 61.4
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.5e-66 256.1 263 57.8
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 3.5e-66 256.1 319 53.6
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 4.5e-66 255.8 353 49.6
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 1.0e-65 254.6 321 52.6
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 2.2e-65 253.4 322 52.5
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.9e-64 250.4 270 57.0
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 1.9e-64 250.4 336 50.3
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 3.2e-64 249.6 226 64.6
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 5.5e-64 248.8 332 50.3
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 2.1e-63 246.9 332 49.7
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 1.0e-62 244.6 319 50.8
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 8.8e-62 241.5 281 53.4
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 1.2e-61 241.1 270 53.7
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 1.3e-60 237.7 170 73.5
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 1.7e-60 237.3 392 44.9
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 4.5e-58 229.2 323 47.7
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 4.5e-58 229.2 284 51.1
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 1.3e-57 227.6 295 51.2
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 1.1e-56 224.6 286 51.7
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 1.5e-56 224.2 365 44.1
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 1.6e-55 220.7 322 48.4
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 3.6e-55 219.5 326 47.2
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 4.7e-55 219.2 263 55.1
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 8.8e-54 214.9 225 61.3
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 6.3e-52 208.8 280 50.0
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 2.9e-49 199.9 326 45.1
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 2.6e-45 186.8 276 44.2
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 3.4e-45 186.4 251 51.4
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 5.7e-45 185.7 332 44.6
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 1.7e-44 184.1 201 55.2
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 3.7e-44 183.0 310 46.1
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 4.9e-44 182.6 353 42.2
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 1.8e-38 164.1 113 78.8
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 2.0e-37 160.6 115 76.5
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 8.3e-36 155.2 290 41.7
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 4.6e-34 149.4 115 72.2
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.0e-33 148.3 159 56.6
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 6.6e-33 145.6 113 68.1
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 1.2e-29 134.8 202 41.6
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 3.4e-29 133.3 318 37.1
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 4.4e-29 132.9 205 46.8
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 3.2e-27 126.7 83 79.5
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 8.6e-25 118.6 103 62.1
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 9.9e-21 105.1 176 47.7
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 4.6e-18 96.3 87 62.1
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.0e-17 95.1 189 37.0
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.0e-17 95.1 189 37.0
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 1.3e-17 94.7 224 34.8
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 1.7e-17 94.4 224 36.2
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 3.0e-17 93.6 68 69.1
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 3.2e-11 73.6 51 70.6
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 3.9e-09 66.6 66 57.6
QL03p064635 Quercus lobata HOM05D005155 ORTHO05D006266 5.1e-09 66.2 61 62.3
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 2.5e-08 63.9 169 35.5
unitig_749.g13565 Utricularia gibba HOM05D005155 ORTHO05D006266 8.1e-07 58.9 164 37.2


User provided reference genes

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