Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G184300 Prunus persica HOM05D006473 ORTHO05D008108 2.9e-95 352.1 200 100.0
FAN05G1961 Fragaria x ananassa HOM05D006473 ORTHO05D008108 3.6e-69 265.4 204 72.1
MD09G1143500 Malus domestica HOM05D006473 ORTHO05D008108 3.6e-69 265.4 201 73.1
RcHm_v2.0_Chr2g0153221 Rosa chinensis HOM05D006473 ORTHO05D008108 6.1e-69 264.6 203 71.4
MD17G1129800 Malus domestica HOM05D006473 ORTHO05D008108 2.6e-67 259.2 205 72.2
FvH4_6g39300 Fragaria vesca HOM05D006473 ORTHO05D008108 9.1e-65 250.8 201 69.2
FAN09G0937 Fragaria x ananassa HOM05D006473 ORTHO05D008108 4.2e-62 241.9 210 66.2
FAN14G2613 Fragaria x ananassa HOM05D006473 ORTHO05D008108 4.2e-62 241.9 210 66.2
CiPaw.03G109100 Carya illinoinensis HOM05D006473 ORTHO05D008108 2.9e-47 192.6 179 57.5
COL.COLO4_19989 Corchorus olitorius HOM05D006473 ORTHO05D008108 3.3e-46 189.1 182 61.5
CANSAT64G1482 Cannabis sativa HOM05D006473 ORTHO05D008108 8.0e-45 184.5 172 60.5
Cfa023365 Carpinus fangiana HOM05D006473 ORTHO05D008108 1.8e-44 183.3 176 56.8
Haze_13544 Corylus avellana HOM05D006473 ORTHO05D008108 6.8e-44 181.4 176 56.8
CiPaw.04G072200 Carya illinoinensis HOM05D006473 ORTHO05D008108 1.2e-43 180.6 173 57.2
Duzib138G0874 Durio zibethinus HOM05D006473 ORTHO05D008108 1.2e-43 180.6 176 56.8
Sabra06G0006200 Salix brachista HOM05D006473 ORTHO05D008108 1.5e-43 180.3 179 58.7
TWI34G1686 Tripterygium wilfordii HOM05D006473 ORTHO05D008108 2.6e-43 179.5 171 57.9
Thecc.01G174700 Theobroma cacao HOM05D006473 ORTHO05D008108 3.7e-42 175.6 182 55.5
Gohir.D11G162300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 1.8e-41 173.3 185 51.4
Gohir.A11G155300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 2.4e-41 172.9 185 50.8
Gorai.007G172600 Gossypium raimondii HOM05D006473 ORTHO05D008108 2.4e-41 172.9 185 50.8
Potri.006G008000 Populus trichocarpa HOM05D006473 ORTHO05D008108 3.1e-41 172.6 179 54.2
COL.COLO4_18222 Corchorus olitorius HOM05D006473 ORTHO05D008108 5.4e-41 171.8 184 58.2
Manes.08G068100 Manihot esculenta HOM05D006473 ORTHO05D008108 7.8e-40 167.9 169 59.8
QL07p025679 Quercus lobata HOM05D006473 ORTHO05D008108 1.5e-38 163.7 186 59.1
Glyma.13G004200 Glycine max HOM05D006473 ORTHO05D008108 1.9e-38 163.3 170 52.9
Lj6g0005292 Lotus japonicus HOM05D006473 ORTHO05D008108 1.9e-38 163.3 179 51.4
Medtr3g082070 Medicago truncatula HOM05D006473 ORTHO05D008108 4.3e-38 162.2 178 51.1
QL10p019398 Quercus lobata HOM05D006473 ORTHO05D008108 9.5e-38 161.0 184 56.0
TPR.G17559 Trifolium pratense HOM05D006473 ORTHO05D008108 2.8e-37 159.5 178 50.6
Psat5g106240 Pisum sativum HOM05D006473 ORTHO05D008108 4.7e-37 158.7 182 50.0
Ciclev10012907m.g Citrus clementina HOM05D006473 ORTHO05D008108 3.0e-36 156.0 168 53.0
Sabra16G0000300 Salix brachista HOM05D006473 ORTHO05D008108 5.2e-36 155.2 180 51.1
QL07p026949 Quercus lobata HOM05D006473 ORTHO05D008108 8.9e-36 154.5 182 57.7
PGR031G0759 Punica granatum HOM05D006473 ORTHO05D008108 4.4e-35 152.1 175 52.6
ClCG11G016910 Citrullus lanatus HOM05D006473 ORTHO05D008108 7.5e-35 151.4 161 53.4
Phvul.007G120134 Phaseolus vulgaris HOM05D006473 ORTHO05D008108 2.2e-34 149.8 169 53.3
QL07p027003 Quercus lobata HOM05D006473 ORTHO05D008108 2.2e-34 149.8 182 55.5
Haze_13545 Corylus avellana HOM05D006473 ORTHO05D008108 8.3e-34 147.9 142 58.5
Sed0027280 Sechium edule HOM05D006473 ORTHO05D008108 1.4e-33 147.1 159 52.2
VMungo0540G0033 Vigna mungo HOM05D006473 ORTHO05D008108 2.4e-33 146.4 165 52.1
Eucgr.A00949 Eucalyptus grandis HOM05D006473 ORTHO05D008108 3.2e-33 146.0 169 49.7
MELO3C026363.2 Cucumis melo HOM05D006473 ORTHO05D008108 1.2e-32 144.1 163 51.5
Glyma.20G063000 Glycine max HOM05D006473 ORTHO05D008108 2.0e-32 143.3 169 47.9
arahy.Tifrunner.gnm1.ann1.UN21ID Arachis hypogaea HOM05D006473 ORTHO05D008108 1.0e-31 141.0 179 48.0
Lalb_Chr17g0337141 Lupinus albus HOM05D006473 ORTHO05D008108 1.0e-31 141.0 161 52.8
arahy.Tifrunner.gnm1.ann1.ITU10B Arachis hypogaea HOM05D006473 ORTHO05D008108 1.7e-31 140.2 180 48.9
CsaV3_4G032520 Cucumis sativus L. HOM05D006473 ORTHO05D008108 6.6e-31 138.3 165 47.9
Cpa.g.sc8.265 Carica papaya HOM05D006473 ORTHO05D008108 3.3e-30 136.0 179 45.8
Sed0014549 Sechium edule HOM05D006473 ORTHO05D008108 3.3e-30 136.0 163 49.7
QL04p064817 Quercus lobata HOM05D006473 ORTHO05D008108 4.7e-29 132.1 168 47.6
Atru.chr8.1011 Acer truncatum HOM05D006473 ORTHO05D008108 3.1e-28 129.4 159 47.8
Ca_16320_v3 Cicer arietinum L. HOM05D006473 ORTHO05D008108 1.2e-27 127.5 158 47.5
TAR626G1015 Trochodendron aralioides HOM05D006473 ORTHO05D008108 5.8e-27 125.2 161 46.6
TAR626G1390 Trochodendron aralioides HOM05D006473 ORTHO05D008108 1.3e-26 124.0 161 47.2
Sp7g13370 Schrenkiella parvula HOM05D006473 ORTHO05D008108 2.2e-26 123.2 168 47.6
QL04p064939 Quercus lobata HOM05D006473 ORTHO05D008108 6.4e-26 121.7 170 46.5
BcaC07g37876 Brassica carinata HOM05D006473 ORTHO05D008108 9.2e-25 117.9 167 48.5
BolC8t48269H Brassica oleracea HOM05D006473 ORTHO05D008108 9.2e-25 117.9 167 48.5
Nn7g38339 Nelumbo nucifera HOM05D006473 ORTHO05D008108 9.2e-25 117.9 161 46.0
A08p11670 Brassica napus HOM05D006473 ORTHO05D008108 1.2e-24 117.5 167 49.1
BraA08t33161Z Brassica rapa HOM05D006473 ORTHO05D008108 1.2e-24 117.5 167 49.1
BcaB02g07838 Brassica carinata HOM05D006473 ORTHO05D008108 1.6e-24 117.1 165 47.3
BraA05t20604Z Brassica rapa HOM05D006473 ORTHO05D008108 2.0e-24 116.7 165 46.7
QL09p045725 Quercus lobata HOM05D006473 ORTHO05D008108 3.5e-24 115.9 143 57.3
THA.LOC104808506 Tarenaya hassleriana HOM05D006473 ORTHO05D008108 4.6e-24 115.5 171 42.1
A05p16970 Brassica napus HOM05D006473 ORTHO05D008108 1.0e-23 114.4 165 46.1
QL07p026979 Quercus lobata HOM05D006473 ORTHO05D008108 1.3e-23 114.0 136 58.1
CARHR221880 Cardamine hirsuta HOM05D006473 ORTHO05D008108 8.6e-23 111.3 157 45.9
AT4G15140 Arabidopsis thaliana HOM05D006473 ORTHO05D008108 1.5e-22 110.5 166 44.6
GSVIVG01015888001 Vitis vinifera HOM05D006473 ORTHO05D008108 1.9e-22 110.2 157 49.0
Aa31LG9G2250 Aethionema arabicum HOM05D006473 ORTHO05D008108 2.5e-22 109.8 170 48.2
Peaxi162Scf00393g01011 Petunia axillaris HOM05D006473 ORTHO05D008108 2.5e-22 109.8 169 43.2
C06p16570 Brassica napus HOM05D006473 ORTHO05D008108 4.3e-22 109.0 164 45.1
BolC6t36859H Brassica oleracea HOM05D006473 ORTHO05D008108 4.3e-22 109.0 164 45.1
AL7G40560 Arabidopsis lyrata HOM05D006473 ORTHO05D008108 5.6e-22 108.6 166 44.0
BcaC08g44251 Brassica carinata HOM05D006473 ORTHO05D008108 7.3e-22 108.2 164 45.1
Carub.0007s2685 Capsella rubella HOM05D006473 ORTHO05D008108 7.3e-22 108.2 169 44.4
BcaB04g18284 Brassica carinata HOM05D006473 ORTHO05D008108 1.2e-21 107.5 166 44.6
CAN.G529.20 Capsicum annuum HOM05D006473 ORTHO05D008108 2.1e-21 106.7 147 46.3
EL10Ac6g15336 Beta vulgaris HOM05D006473 ORTHO05D008108 3.6e-21 105.9 175 41.1
Thhalv10027487m.g Eutrema salsugineum HOM05D006473 ORTHO05D008108 6.2e-21 105.1 167 42.5
Actinidia32074 Actinidia chinensis HOM05D006473 ORTHO05D008108 1.8e-20 103.6 189 39.2
Lsat_1_v5_gn_1_29560 Lactuca sativa HOM05D006473 ORTHO05D008108 4.0e-20 102.4 185 37.8
Aqoxy5G02466 Aquilegia oxysepala HOM05D006473 ORTHO05D008108 6.8e-20 101.7 147 44.2
Nitab4.5_0002292g0030 Nicotiana tabacum HOM05D006473 ORTHO05D008108 1.5e-19 100.5 170 40.6
Nitab4.5_0011512g0010 Nicotiana tabacum HOM05D006473 ORTHO05D008108 1.5e-19 100.5 153 45.8
Peaxi162Scf00322g00416 Petunia axillaris HOM05D006473 ORTHO05D008108 3.4e-19 99.4 174 40.8
FAN02G3828 Fragaria x ananassa HOM05D006473 ORTHO05D008108 4.4e-19 99.0 108 60.2
PGSC0003DMG400013558 Solanum tuberosum HOM05D006473 ORTHO05D008108 1.3e-18 97.4 154 42.2
CSS0026100 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 2.2e-18 96.7 169 40.8
CSS0046570 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 2.2e-18 96.7 169 40.8
Hund04387 Selenicereus undatus HOM05D006473 ORTHO05D008108 2.2e-18 96.7 174 35.1
Hund23023 Selenicereus undatus HOM05D006473 ORTHO05D008108 8.3e-18 94.7 174 35.6
Sc07g0001930 Simmondsia chinensis HOM05D006473 ORTHO05D008108 1.9e-17 93.6 174 38.5
Sopen07g022630 Solanum pennellii HOM05D006473 ORTHO05D008108 1.9e-17 93.6 156 41.0
Solyc07g043070.3 Solanum lycopersicum HOM05D006473 ORTHO05D008108 2.4e-17 93.2 154 42.2
Migut.H01260 Erythranthe guttata HOM05D006473 ORTHO05D008108 7.1e-17 91.7 160 39.4
vmacro08765 Vaccinium macrocarpon HOM05D006473 ORTHO05D008108 9.2e-17 91.3 158 42.4
Rhsim12G0015400 Rhododendron simsii HOM05D006473 ORTHO05D008108 1.6e-16 90.5 153 43.8
Cpa.g.sc32.52 Carica papaya HOM05D006473 ORTHO05D008108 2.1e-16 90.1 156 43.6
ECA247G3587 Erigeron canadensis HOM05D006473 ORTHO05D008108 4.6e-16 89.0 175 38.3
Nitab4.5_0000170g0320 Nicotiana tabacum HOM05D006473 ORTHO05D008108 1.0e-15 87.8 124 47.6
Cc00_g04870 Coffea canephora HOM05D006473 ORTHO05D008108 3.0e-15 86.3 159 40.9
Actinidia12507 Actinidia chinensis HOM05D006473 ORTHO05D008108 1.1e-14 84.3 177 39.0
HanXRQChr02g0035171 Helianthus annuus HOM05D006473 ORTHO05D008108 1.9e-14 83.6 177 40.1
DCAR_029496 Daucus carota HOM05D006473 ORTHO05D008108 1.2e-13 80.9 180 40.0
PSO675G8005 Papaver somniferum HOM05D006473 ORTHO05D008108 1.6e-13 80.5 151 45.7
MBI02_g01129_MAGBIO Magnolia biondii HOM05D006464 ORTHO05D007923 1.8e-12 77.0 120 45.8
QL05p058452 Quercus lobata HOM05D000045 ORTHO05D000611 2.4e-12 76.6 69 56.5
CDE05G3197 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 5.2e-12 75.5 153 33.3
SGA_v2.0_scaffold49G18372 Striga asiatica HOM05D006473 ORTHO05D008108 1.5e-11 73.9 144 39.6
CDE11G0296 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 6.4e-10 68.6 81 48.1
HPP92_016064 Vanilla planifolia HOM05D006473 ORTHO05D008108 6.4e-10 68.6 39 74.4
Os04g0504200 Oryza sativa ssp. japonica HOM05D006473 ORTHO05D008108 1.9e-09 67.0 171 32.7
Zm00001eb078060 Zea mays HOM05D006473 ORTHO05D008108 4.1e-09 65.9 52 63.5
unitig_62.g23243 Utricularia gibba HOM05D006473 ORTHO05D008108 9.2e-09 64.7 98 44.9
AUR62017858 Chenopodium quinoa HOM05D006473 ORTHO05D008108 2.7e-08 63.2 162 32.7
Oeu027256.1 Olea europaea HOM05D006473 ORTHO05D008108 7.8e-08 61.6 81 46.9
RcHm_v2.0_Chr3g0480451 Rosa chinensis HOM05D006473 ORTHO05D008108 3.9e-07 59.3 73 54.8
ATR0763G071 Amborella trichopoda HOM05D006473 ORTHO05D008108 3.3e-06 56.2 145 33.1


User provided reference genes

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