Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 3.5e-98 361.7 190 100.0
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 3.7e-68 261.9 192 78.1
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 1.8e-62 243.0 191 73.8
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 1.8e-62 243.0 192 74.0
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 5.2e-62 241.5 191 72.8
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 8.9e-62 240.7 191 73.3
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 5.4e-59 231.5 191 71.7
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 6.0e-58 228.0 195 70.3
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 3.0e-57 225.7 219 62.6
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 5.1e-57 224.9 192 68.2
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 4.3e-56 221.9 196 67.9
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 5.6e-56 221.5 194 68.0
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 9.6e-56 220.7 194 70.1
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 3.6e-55 218.8 191 68.1
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 4.0e-54 215.3 196 64.8
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 3.4e-53 212.2 194 68.0
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 5.8e-53 211.5 195 67.2
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 9.9e-53 210.7 186 67.7
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 2.2e-52 209.5 195 65.6
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 2.9e-52 209.1 177 67.2
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 7.1e-51 204.5 195 65.6
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 2.1e-50 203.0 226 55.3
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 1.7e-49 199.9 195 62.1
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 2.3e-49 199.5 196 64.8
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 3.9e-49 198.7 194 64.4
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 5.1e-49 198.4 169 69.2
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 6.6e-49 198.0 195 63.1
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 8.7e-49 197.6 124 83.9
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 8.7e-49 197.6 194 61.9
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 3.3e-48 195.7 194 63.4
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 4.3e-48 195.3 192 63.0
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 1.3e-47 193.7 208 60.1
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.3e-47 193.7 193 63.2
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 1.6e-47 193.4 190 65.3
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 2.8e-47 192.6 158 71.5
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 6.2e-47 191.4 158 70.9
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 6.2e-47 191.4 174 67.8
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 8.1e-47 191.0 190 64.7
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 1.1e-46 190.7 172 65.7
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 3.1e-46 189.1 191 60.7
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 3.1e-46 189.1 178 64.6
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 3.1e-46 189.1 191 62.3
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 4.0e-46 188.7 194 60.8
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 5.3e-46 188.3 176 66.5
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 1.2e-45 187.2 190 61.6
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.5e-45 186.8 176 66.5
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 2.6e-45 186.0 166 66.9
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 3.4e-45 185.7 190 63.2
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 4.5e-45 185.3 167 65.9
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 4.5e-45 185.3 202 60.4
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 4.5e-45 185.3 195 61.0
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 5.8e-45 184.9 123 80.5
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 5.8e-45 184.9 150 70.0
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 9.9e-45 184.1 193 61.7
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 1.3e-44 183.7 175 62.9
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 2.9e-44 182.6 126 81.0
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 8.4e-44 181.0 162 66.7
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 1.9e-43 179.9 145 69.7
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 1.2e-42 177.2 188 60.1
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 1.6e-42 176.8 171 63.2
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 2.7e-42 176.0 196 59.7
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 4.6e-42 175.3 148 66.9
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 6.0e-42 174.9 152 68.4
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 1.3e-41 173.7 206 59.2
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 5.1e-41 171.8 201 56.2
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 6.7e-41 171.4 196 58.7
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 6.7e-41 171.4 196 58.7
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 6.7e-41 171.4 196 58.7
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 8.7e-41 171.0 153 68.0
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.1e-40 170.6 193 56.5
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 4.3e-40 168.7 186 59.7
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 9.6e-40 167.5 192 54.7
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 1.3e-39 167.2 191 58.1
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 1.6e-39 166.8 121 76.0
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 2.1e-39 166.4 204 55.9
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 6.2e-39 164.9 190 55.8
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 1.4e-38 163.7 154 62.3
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 2.4e-38 162.9 214 53.7
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 5.3e-38 161.8 200 56.5
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 2.0e-37 159.8 200 56.0
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 2.6e-37 159.5 205 54.1
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 2.6e-37 159.5 193 57.0
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 1.0e-36 157.5 125 69.6
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.3e-36 157.1 171 60.8
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 2.9e-36 156.0 201 56.2
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 6.5e-36 154.8 98 81.6
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 8.4e-36 154.5 135 65.9
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 1.1e-35 154.1 195 55.9
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 3.2e-35 152.5 203 54.7
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 3.2e-35 152.5 163 57.7
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 3.0e-33 146.0 132 62.1
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 8.7e-33 144.4 87 83.9
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 1.1e-32 144.1 102 75.5
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 4.8e-31 138.7 202 48.5
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 2.4e-30 136.3 202 48.0
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 4.1e-30 135.6 125 60.8
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 4.1e-30 135.6 166 52.4
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 2.0e-29 133.3 177 51.4
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 8.4e-28 127.9 132 55.3
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 4.2e-27 125.6 124 59.7
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 2.1e-26 123.2 135 58.5
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 1.8e-25 120.2 125 62.4
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 8.7e-25 117.9 121 57.0
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 1.1e-24 117.5 111 64.0
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 2.8e-23 112.8 99 66.7
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 3.7e-23 112.5 83 74.7
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.5e-21 105.5 81 74.1
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.5e-21 105.5 81 74.1
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 1.1e-19 100.9 146 41.8
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.6e-18 95.5 112 52.7
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 3.9e-17 92.4 154 42.9
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 8.2e-15 84.7 123 42.3
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 1.8e-14 83.6 80 60.0
Duzib130G0001 Durio zibethinus HOM05D006899 ORTHO05D008566 1.9e-11 73.6 94 53.2
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 2.5e-11 73.2 91 50.5
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 8.8e-09 64.7 69 42.0


User provided reference genes

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