Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 8.9e-144 513.8 309 100.0
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 7.2e-85 318.2 315 67.9
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 1.8e-80 303.5 312 66.7
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 8.2e-65 251.5 325 48.6
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 7.0e-64 248.4 311 60.8
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 2.7e-63 246.5 313 54.3
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 8.5e-62 241.5 322 51.6
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 5.5e-61 238.8 310 61.0
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 3.4e-58 229.6 302 59.3
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 7.0e-56 221.9 354 54.2
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 2.7e-55 219.9 301 57.5
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.5e-55 219.2 314 50.6
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 2.9e-54 216.5 338 45.6
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 3.8e-54 216.1 320 58.4
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 1.5e-53 214.2 348 43.7
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 1.9e-53 213.8 317 47.6
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 1.9e-53 213.8 313 56.2
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 5.5e-53 212.2 331 56.8
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.5e-53 212.2 320 50.9
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 9.4e-53 211.5 325 54.5
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 2.7e-52 209.9 326 44.8
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 3.6e-52 209.5 321 45.8
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 3.6e-52 209.5 320 46.6
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 1.4e-51 207.6 308 46.1
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 8.8e-51 204.9 324 55.6
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 2.0e-50 203.8 309 46.3
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 3.4e-50 203.0 309 46.9
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 3.4e-50 203.0 313 55.0
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 3.4e-50 203.0 313 54.3
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 5.7e-50 202.2 339 45.1
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 7.5e-50 201.8 341 48.4
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 6.3e-49 198.7 344 45.9
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 6.3e-49 198.7 311 54.0
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 8.3e-49 198.4 309 44.3
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 8.3e-49 198.4 322 47.8
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 1.1e-48 198.0 328 43.6
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 1.4e-48 197.6 323 55.7
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.8e-48 197.2 313 43.5
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 1.8e-48 197.2 354 49.2
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 7.0e-48 195.3 323 54.2
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 9.2e-48 194.9 307 44.0
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 1.2e-47 194.5 310 46.5
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 1.2e-47 194.5 331 49.8
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 2.0e-47 193.7 327 51.4
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 1.3e-46 191.0 316 55.4
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 2.3e-46 190.3 306 54.2
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 5.0e-46 189.1 331 49.8
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 1.5e-45 187.6 308 43.5
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 1.9e-45 187.2 341 48.4
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 9.5e-45 184.9 135 68.1
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 4.7e-44 182.6 236 51.7
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 6.1e-44 182.2 130 67.7
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 6.1e-44 182.2 314 46.5
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.0e-43 181.4 314 46.2
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 1.4e-43 181.0 136 64.0
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 3.0e-43 179.9 365 40.8
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 3.0e-43 179.9 310 54.2
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 4.0e-43 179.5 324 54.3
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 8.9e-43 178.3 271 50.2
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 1.2e-42 177.9 307 43.0
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 3.4e-42 176.4 513 37.0
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 3.4e-42 176.4 310 47.4
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 3.4e-42 176.4 292 45.9
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 5.7e-42 175.6 457 38.9
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 1.3e-41 174.5 124 67.7
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.7e-41 174.1 227 51.1
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 2.2e-41 173.7 120 73.3
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 4.9e-41 172.6 223 48.9
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 6.4e-41 172.2 120 68.3
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 1.8e-40 170.6 307 43.0
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.8e-40 170.6 115 68.7
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 2.4e-40 170.2 350 40.6
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 2.4e-40 170.2 374 44.4
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 5.4e-40 169.1 115 69.6
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 7.0e-40 168.7 360 41.7
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 7.0e-40 168.7 305 47.5
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 7.0e-40 168.7 122 65.6
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 9.2e-40 168.3 345 50.4
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 1.6e-39 167.5 124 64.5
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 2.0e-39 167.2 120 65.0
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 2.7e-39 166.8 334 44.9
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 3.5e-39 166.4 281 45.2
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 4.6e-39 166.0 301 43.2
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.6e-39 166.0 423 34.3
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 5.9e-39 165.6 452 38.5
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 7.8e-39 165.2 135 60.7
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 7.8e-39 165.2 133 60.9
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 1.0e-38 164.9 414 44.7
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 1.0e-38 164.9 303 53.5
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 1.3e-38 164.5 305 40.7
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 1.7e-38 164.1 135 60.0
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 1.7e-38 164.1 323 45.8
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 3.0e-38 163.3 129 63.6
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 3.9e-38 162.9 137 60.6
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 5.0e-38 162.5 116 69.8
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 5.0e-38 162.5 129 63.6
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 5.0e-38 162.5 124 60.5
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 8.6e-38 161.8 397 45.8
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 8.6e-38 161.8 301 42.2
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 1.5e-37 161.0 350 46.9
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 1.9e-37 160.6 114 64.9
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 2.5e-37 160.2 415 43.9
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 2.5e-37 160.2 320 51.9
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.5e-37 160.2 130 62.3
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 4.3e-37 159.5 145 57.9
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 4.3e-37 159.5 279 43.0
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 9.5e-37 158.3 138 61.6
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 9.5e-37 158.3 128 59.4
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 1.6e-36 157.5 238 58.0
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 2.1e-36 157.1 335 44.8
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 2.8e-36 156.8 310 51.3
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 2.8e-36 156.8 323 47.1
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 2.8e-36 156.8 394 45.2
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 8.0e-36 155.2 396 45.7
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 1.4e-35 154.5 107 68.2
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 1.8e-35 154.1 399 45.4
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.1e-35 153.3 432 37.7
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 4.0e-35 152.9 114 64.9
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 6.8e-35 152.1 298 39.6
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 6.8e-35 152.1 282 40.4
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 8.9e-35 151.8 315 47.3
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 1.5e-34 151.0 422 41.9
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 2.0e-34 150.6 315 43.2
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 2.6e-34 150.2 315 44.8
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 2.6e-34 150.2 315 44.8
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 2.6e-34 150.2 315 44.8
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 2.6e-34 150.2 315 44.8
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 3.4e-34 149.8 115 64.3
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 4.4e-34 149.4 483 37.5
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 5.8e-34 149.1 312 41.0
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 7.5e-34 148.7 302 43.7
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 9.8e-34 148.3 317 42.9
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.7e-33 147.5 128 57.0
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 1.1e-32 144.8 137 56.9
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 4.1e-32 142.9 301 45.2
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 4.1e-32 142.9 117 57.3
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 4.1e-32 142.9 234 40.2
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 7.0e-32 142.1 107 62.6
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 9.2e-32 141.7 302 41.7
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 1.2e-31 141.4 136 58.1
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 1.0e-30 138.3 123 57.7
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 1.0e-30 138.3 128 54.7
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 3.0e-30 136.7 136 52.2
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 3.9e-30 136.3 148 51.4
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 1.1e-29 134.8 109 58.7
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 1.5e-29 134.4 97 70.1
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 4.3e-29 132.9 118 56.8
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 5.6e-29 132.5 249 43.8
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 5.6e-29 132.5 136 51.5
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 1.6e-28 131.0 325 46.8
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 6.2e-28 129.0 112 56.2
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 1.4e-27 127.9 114 59.6
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 1.8e-27 127.5 116 58.6
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 2.3e-27 127.1 116 58.6
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 2.3e-27 127.1 116 58.6
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 2.3e-27 127.1 116 58.6
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 5.2e-27 125.9 103 58.3
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 3.4e-26 123.2 114 54.4
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 9.8e-26 121.7 115 55.7
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 3.7e-25 119.8 138 53.6
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 6.4e-25 119.0 114 53.5
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 3.2e-24 116.7 119 53.8
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 1.7e-22 110.9 91 54.9
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 2.3e-22 110.5 346 44.2
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 3.0e-22 110.2 127 48.8
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 8.6e-22 108.6 110 55.5
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 1.1e-21 108.2 265 41.9
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 3.4e-18 96.7 123 42.3
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 4.9e-17 92.8 229 47.2
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 1.9e-16 90.9 131 43.5
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 1.2e-15 88.2 125 41.6
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 2.7e-15 87.0 105 43.8
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 1.7e-14 84.3 109 42.2
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 3.3e-13 80.1 108 40.7
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.1e-11 75.1 72 54.2
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.5e-10 71.2 108 38.0
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 9.9e-10 68.6 33 75.8
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 2.2e-09 67.4 109 36.7
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 1.9e-08 64.3 52 65.4
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 2.1e-07 60.8 116 34.5
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 6.0e-07 59.3 93 39.8
TPR.G23241 Trifolium pratense HOM05D003750 ORTHO05D004337 1.0e-06 58.5 152 40.1


User provided reference genes

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