Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 2.5e-203 711.8 348 100.0
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 7.1e-166 587.4 348 80.5
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 1.5e-163 579.7 348 79.6
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.8e-153 546.2 348 75.0
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 5.3e-153 544.7 348 74.7
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 5.3e-153 544.7 348 74.7
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.6e-152 542.3 348 74.4
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 6.9e-145 517.7 346 70.8
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 7.7e-144 514.2 346 70.2
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 1.0e-143 513.8 346 70.8
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 7.2e-142 507.7 346 68.5
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 1.2e-136 490.3 346 66.5
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 1.3e-135 486.9 348 67.0
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.7e-135 486.5 347 67.7
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 2.2e-135 486.1 346 67.6
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 3.8e-135 485.3 346 65.9
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 1.1e-134 483.8 346 63.6
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.9e-134 483.0 346 66.5
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.6e-133 478.8 347 66.3
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 4.7e-133 478.4 346 65.9
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 6.1e-133 478.0 350 62.9
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 8.0e-133 477.6 346 64.7
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 3.0e-132 475.7 348 65.5
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 4.0e-132 475.3 346 65.0
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 4.0e-132 475.3 347 65.7
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 4.0e-132 475.3 347 65.7
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 4.0e-132 475.3 348 65.5
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 6.7e-132 474.6 347 64.3
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 2.6e-131 472.6 349 65.6
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 3.3e-131 472.2 352 62.5
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 9.7e-131 470.7 340 65.9
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 1.1e-129 467.2 345 62.0
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 7.7e-128 461.1 342 64.3
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 3.8e-127 458.8 346 63.6
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 5.0e-127 458.4 351 62.7
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 8.5e-127 457.6 363 60.6
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 8.5e-127 457.6 348 62.1
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 8.5e-127 457.6 358 60.1
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 1.1e-126 457.2 362 60.2
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.5e-126 456.8 348 63.2
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 5.5e-126 454.9 334 65.9
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 5.5e-126 454.9 314 69.4
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 9.4e-126 454.1 363 60.6
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 9.4e-126 454.1 347 62.5
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 3.6e-125 452.2 341 64.5
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.0e-124 450.7 347 61.4
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 1.8e-124 449.9 318 65.7
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 5.2e-124 448.4 347 62.0
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.5e-123 446.8 306 66.0
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 2.0e-123 446.4 347 62.0
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 4.4e-123 445.3 347 62.0
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 5.7e-123 444.9 348 61.5
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 9.8e-123 444.1 323 64.7
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.3e-122 443.7 346 62.4
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 1.7e-122 443.4 328 64.0
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.7e-122 443.4 335 58.8
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 1.7e-122 443.4 348 61.2
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 4.8e-122 441.8 303 65.7
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 1.1e-121 440.7 335 61.8
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 2.4e-121 439.5 346 61.6
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 3.1e-121 439.1 338 62.7
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 4.1e-121 438.7 348 60.9
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 5.4e-121 438.3 350 58.9
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 5.9e-120 434.9 333 59.8
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.7e-119 433.3 288 70.5
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 8.5e-119 431.0 324 62.3
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.5e-118 430.3 349 59.3
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 2.5e-118 429.5 300 67.0
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 2.5e-118 429.5 334 59.3
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 3.2e-118 429.1 352 58.5
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 2.1e-117 426.4 355 56.9
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.8e-116 423.3 346 56.6
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 3.4e-115 419.1 354 58.5
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 3.4e-115 419.1 350 59.7
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.7e-114 416.8 335 59.1
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 3.7e-114 415.6 342 55.6
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 2.0e-112 409.8 322 59.9
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 1.3e-111 407.1 346 58.4
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 4.7e-109 398.7 313 60.7
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 6.1e-109 398.3 348 56.6
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 3.4e-107 392.5 330 53.3
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 9.8e-107 391.0 346 55.8
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 4.9e-106 388.7 346 53.8
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.6e-104 383.6 294 62.9
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 3.9e-103 379.0 349 53.3
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 6.6e-103 378.3 346 52.9
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 8.6e-103 377.9 349 54.2
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 1.1e-102 377.5 348 54.3
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 4.3e-102 375.6 349 53.0
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.6e-101 373.6 349 52.1
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 3.6e-101 372.5 349 52.7
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 3.6e-101 372.5 349 52.7
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.4e-100 370.5 351 53.0
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 3.1e-100 369.4 352 52.0
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 8.9e-100 367.9 348 52.3
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 3.4e-99 365.9 295 59.0
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 4.9e-98 362.1 352 50.9
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 1.2e-96 357.5 356 50.6
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.0e-96 356.7 335 54.6
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 6.0e-96 355.1 320 51.9
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 2.3e-95 353.2 341 50.7
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 4.7e-93 345.5 347 52.4
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 8.1e-93 344.7 337 53.1
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 7.5e-91 338.2 328 57.6
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.3e-79 300.8 260 56.5
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.3e-78 296.2 218 60.6
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 4.0e-76 289.3 288 48.6
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 9.9e-75 284.6 296 50.0
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 1.7e-74 283.9 299 49.2
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.2e-74 283.5 284 47.5
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 3.8e-74 282.7 321 45.5
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.8e-68 263.8 293 43.3
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 7.1e-65 251.9 342 38.9
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 1.2e-59 234.6 190 55.3
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.7e-55 218.8 152 66.4
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-49 201.4 310 38.1
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.1e-49 198.7 291 38.1
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-48 198.0 321 35.8
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.3e-46 189.5 296 38.9
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 5.7e-46 189.1 282 35.8
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-44 184.9 288 36.8
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.1e-44 183.3 319 34.8
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-42 175.6 272 37.1
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-41 174.5 306 35.0
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.2e-41 172.2 293 37.2
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.1e-40 169.1 306 34.6
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-39 168.3 304 34.2
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.1e-39 166.0 307 32.9
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.7e-38 161.8 236 37.7
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.2e-37 160.6 284 32.7
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 4.1e-36 156.4 294 32.3
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.7e-35 152.1 306 29.7
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.5e-34 148.7 345 31.3
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.9e-33 147.5 289 31.8
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.1e-31 139.4 289 30.1
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.7e-27 125.6 317 29.0
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-25 120.6 270 28.9
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 3.1e-20 103.6 271 27.7
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-13 80.9 63 54.0
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 5.3e-12 76.3 47 66.0
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 9.1e-12 75.5 100 43.0
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.7e-11 73.9 74 43.2
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.3e-10 71.6 153 30.7


User provided reference genes

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