Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 3.1e-80 301.6 136 100.0
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.2e-68 263.1 134 84.3
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.1e-68 262.3 134 84.3
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-67 259.6 134 83.6
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.7e-67 259.2 134 82.1
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 3.9e-67 258.1 134 83.6
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.9e-67 258.1 134 83.6
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 5.1e-67 257.7 135 81.5
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 5.1e-67 257.7 134 82.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 8.6e-67 256.9 134 84.3
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.6e-66 254.2 135 77.8
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.3e-66 253.8 134 82.1
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.6e-65 251.5 134 79.1
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.4e-64 249.6 133 79.7
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.8e-64 249.2 134 80.6
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.4e-64 248.8 134 80.6
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.2e-64 247.7 133 78.2
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 6.8e-64 247.3 134 76.9
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 6.8e-64 247.3 135 79.3
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.0e-63 245.7 134 80.6
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.4e-63 245.0 133 77.4
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.8e-63 244.2 134 76.1
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 7.6e-63 243.8 134 74.6
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.3e-62 243.0 137 74.5
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.3e-62 243.0 134 73.9
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.7e-62 242.7 134 74.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.7e-62 242.7 134 76.1
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.2e-62 242.3 134 74.6
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.2e-62 242.3 134 75.4
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.9e-62 241.9 134 74.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 4.9e-62 241.1 133 74.4
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 4.9e-62 241.1 134 76.1
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 6.4e-62 240.7 134 74.6
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 6.4e-62 240.7 134 74.6
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 8.4e-62 240.4 134 74.6
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 8.4e-62 240.4 134 75.4
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 8.4e-62 240.4 134 73.1
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.4e-61 239.6 134 75.4
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.4e-61 239.6 134 74.6
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.4e-61 239.6 134 73.9
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.9e-61 239.2 136 73.5
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.9e-61 239.2 134 72.4
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.4e-61 238.8 134 75.4
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.1e-61 238.0 134 72.4
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 5.4e-61 237.7 133 73.7
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 7.1e-61 237.3 134 73.9
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 9.2e-61 236.9 134 72.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 9.2e-61 236.9 130 74.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.2e-60 236.5 134 76.1
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.6e-60 236.1 134 73.9
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 3.5e-60 235.0 121 83.5
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.6e-60 234.6 134 69.4
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 4.6e-60 234.6 134 72.4
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 6.0e-60 234.2 128 77.3
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 6.0e-60 234.2 134 74.6
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 6.0e-60 234.2 134 69.4
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 6.0e-60 234.2 134 70.9
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 6.0e-60 234.2 134 73.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.0e-60 234.2 135 74.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 6.0e-60 234.2 133 71.4
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 7.8e-60 233.8 134 75.4
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 7.8e-60 233.8 132 73.5
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 7.8e-60 233.8 134 73.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 7.8e-60 233.8 134 73.1
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-59 233.4 134 70.9
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-59 233.0 134 71.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-59 232.6 134 70.9
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.7e-59 232.6 134 70.1
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.7e-59 232.6 134 71.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.7e-59 232.6 134 73.9
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 5.1e-59 231.1 134 71.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 6.6e-59 230.7 134 72.4
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 8.7e-59 230.3 134 70.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 8.7e-59 230.3 134 71.6
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.1e-58 229.9 134 71.6
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.1e-58 229.9 134 70.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.5e-58 229.6 134 73.1
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.5e-58 229.6 134 70.1
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.9e-58 229.2 134 70.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 2.5e-58 228.8 134 69.4
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 3.3e-58 228.4 134 72.4
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.3e-58 228.4 134 70.9
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 5.6e-58 227.6 134 72.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 9.6e-58 226.9 129 70.5
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.2e-57 226.5 131 72.5
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.6e-57 226.1 134 70.9
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.6e-57 226.1 134 70.9
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.6e-57 226.1 129 70.5
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 3.6e-57 224.9 134 70.9
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 3.6e-57 224.9 132 72.0
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 4.7e-57 224.6 133 72.2
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.7e-57 224.6 121 75.2
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.1e-56 223.4 135 69.6
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 70.9
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.4e-56 223.0 132 69.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.8e-56 222.6 133 71.4
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.8e-56 222.6 123 73.2
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 1.8e-56 222.6 134 70.1
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 4.0e-56 221.5 134 70.1
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.2e-55 219.9 135 70.4
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 2.0e-55 219.2 133 70.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.6e-55 218.8 134 67.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 2.6e-55 218.8 121 77.7
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 3.4e-55 218.4 133 68.4
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.7e-54 216.1 121 73.6
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.7e-54 216.1 120 75.8
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 2.2e-54 215.7 134 67.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 2.9e-54 215.3 131 67.2
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.1e-53 213.4 134 65.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.4e-53 213.0 125 72.0
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.9e-53 212.6 133 63.9
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 9.3e-53 210.3 128 69.5
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.1e-52 209.1 125 65.6
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 4.6e-52 208.0 173 55.5
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.0e-52 207.6 130 63.8
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.7e-51 206.1 130 63.1
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.3e-51 205.7 121 66.9
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 3.0e-51 205.3 130 65.4
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 6.6e-51 204.1 133 61.7
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.3e-50 201.8 126 66.7
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 8.1e-49 197.2 132 59.8
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.1e-49 197.2 116 67.2
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.1e-49 197.2 134 61.2
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.8e-48 196.1 129 62.0
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 4.0e-48 194.9 134 61.9
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.4e-47 191.8 134 62.7
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 7.6e-47 190.7 130 61.5
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.2e-46 189.1 131 60.3
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.9e-46 188.7 130 62.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.3e-43 179.1 130 60.8
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 5.1e-43 177.9 107 67.3
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.1e-42 176.8 131 58.8
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.9e-42 176.0 129 57.4
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 2.5e-42 175.6 101 69.3
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.3e-41 173.3 135 60.0
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 2.8e-41 172.2 96 74.0
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 1.8e-40 169.5 97 77.3
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.9e-40 167.5 132 56.8
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.2e-39 166.8 128 57.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-37 160.2 132 55.3
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 6.0e-36 154.5 96 68.8
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.1e-35 151.4 85 75.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 2.6e-31 139.0 143 43.4
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.9e-30 134.8 75 74.7
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.2e-29 132.1 69 81.2
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 5.7e-26 121.3 74 70.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.2e-25 117.5 112 48.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-22 108.2 63 71.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-21 107.1 78 56.4
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 5.1e-19 98.2 80 52.5


User provided reference genes

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