Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1494.2 749 100.0
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1442.9 750 95.6
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1441.0 750 95.7
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1362.8 751 90.4
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1352.8 750 90.1
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1349.0 748 90.0
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1347.4 750 90.0
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1326.2 717 91.5
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1303.9 750 86.3
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1302.3 752 86.2
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1298.1 749 86.1
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1296.6 753 85.8
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1295.0 749 85.2
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1295.0 749 85.3
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1295.0 749 85.0
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1293.5 752 86.4
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1293.5 749 85.2
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1293.1 750 84.9
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1292.7 747 85.0
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1292.3 749 85.7
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1291.2 749 85.7
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1289.2 749 85.0
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1288.5 747 84.3
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1286.2 749 85.2
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1286.2 750 85.5
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 749 84.5
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1283.9 749 84.4
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1282.7 750 84.1
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1281.9 755 85.7
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1280.4 751 84.4
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1279.6 749 84.1
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1279.2 751 84.8
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1278.8 749 83.6
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1278.1 750 84.1
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1277.7 750 84.3
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1276.2 748 84.8
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1275.8 745 85.4
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1274.2 749 83.6
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1273.8 748 84.1
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 747 83.8
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1271.9 747 83.9
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1270.8 748 83.6
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1270.4 749 83.2
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1270.0 751 83.5
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 747 83.8
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 749 84.2
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1267.3 749 83.3
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 747 83.5
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 748 84.1
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 749 83.0
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 748 83.6
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1260.0 749 83.0
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 751 82.8
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1258.0 782 80.7
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 751 84.2
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 748 83.4
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 805 79.6
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1255.0 747 83.7
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 751 83.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 760 82.5
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 751 83.2
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 749 83.2
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 750 83.7
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1244.6 750 83.2
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 751 82.0
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1242.6 749 82.1
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1239.9 750 83.2
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1239.6 752 82.0
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 758 81.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1237.2 758 81.5
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1236.9 750 81.7
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 844 74.9
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 751 82.0
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 754 81.3
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 750 80.8
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 750 81.2
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 750 82.7
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1231.5 750 80.4
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1229.5 749 81.6
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1226.8 743 81.4
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1223.0 692 85.7
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 749 80.8
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 749 80.5
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 750 80.0
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 751 80.4
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 751 80.6
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 743 81.2
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 749 80.0
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1212.6 749 80.1
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 751 80.3
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 752 80.9
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 755 79.5
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 751 80.2
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 750 79.2
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 751 80.2
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 751 80.2
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1207.2 751 79.9
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1204.9 743 80.8
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1201.0 753 79.7
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 745 79.9
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 783 76.2
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 749 79.3
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 657 87.7
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 750 78.7
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 743 79.0
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1182.9 760 77.9
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1172.1 752 78.6
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1151.0 749 77.3
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1148.3 657 85.2
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1145.6 657 85.4
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1141.7 750 77.5
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1140.2 657 86.3
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1132.9 667 84.7
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1130.2 741 76.2
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1114.4 1048 58.3
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1114.0 760 73.3
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 0.0e+00 1087.8 624 86.1
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.6e-308 1062.4 751 73.9
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.4e-288 995.3 679 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 6.7e-286 987.3 678 69.9
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 2.1e-284 982.2 676 70.4
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.3e-277 958.0 675 68.3
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.3e-277 958.0 675 68.3
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 9.6e-277 956.8 675 68.1
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 6.2e-276 954.1 757 63.4
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 2.2e-260 902.5 592 76.2
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 8.5e-257 890.6 592 75.7
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.7e-252 876.3 679 62.3
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.2e-229 800.4 679 58.5
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 3.5e-226 788.9 680 57.9
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 5.0e-217 758.4 677 57.8
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 8.3e-212 741.1 677 61.7
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.6e-197 693.0 676 51.6
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.7e-177 627.1 710 47.6
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 4.0e-166 589.3 361 78.9
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 5.7e-160 568.9 324 87.3
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.2e-157 561.2 305 88.9
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 9.1e-142 508.4 303 84.8
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 2.2e-135 487.3 301 81.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.4e-129 468.0 307 76.2
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.1e-118 430.3 294 71.1
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 3.8e-108 396.7 236 83.1
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.2e-98 365.2 298 66.4
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 1.0e-97 362.1 241 77.2
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.8e-96 356.3 298 64.8
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 8.3e-95 352.4 219 80.8
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.8e-89 334.7 226 76.5
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 1.8e-73 281.6 172 79.1
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 6.6e-68 263.1 260 57.7
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 9.6e-67 259.2 364 39.8
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.3e-66 258.8 403 44.4
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-65 255.0 125 96.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.5e-64 251.9 159 78.0
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-58 231.5 113 95.6
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 9.3e-46 189.5 143 71.3
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 3.9e-44 184.1 149 65.1
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.0e-41 172.9 158 58.9
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 2.6e-40 171.4 102 73.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 3.2e-38 164.5 122 69.7
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.5e-35 154.8 86 81.4
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 1.4e-33 149.1 142 52.8
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.3e-31 142.5 107 68.2
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.2e-29 136.0 83 79.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 2.3e-28 131.7 105 61.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 7.4e-27 126.7 75 80.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 2.8e-26 124.8 61 93.4
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 2.0e-24 118.6 99 64.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.4e-22 112.5 221 30.3
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.7e-21 108.2 144 50.7
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.3e-15 89.4 56 76.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 8.5e-15 86.7 49 77.6
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 2.0e-11 75.5 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.8e-10 71.6 38 89.5


User provided reference genes

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