Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 0.0e+00 1262.3 646 100.0
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 0.0e+00 1115.9 645 87.9
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 0.0e+00 1083.9 646 85.1
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 2.6e-310 1068.1 646 83.9
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 5.2e-295 1017.3 644 79.5
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 1.3e-290 1002.7 645 77.8
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 6.6e-290 1000.3 645 77.4
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 9.8e-286 986.5 645 75.7
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.1e-284 983.0 646 78.9
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 1.2e-283 979.5 645 76.4
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.3e-282 976.1 644 75.2
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 3.9e-282 974.5 645 74.6
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.2e-280 969.5 645 75.8
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 3.6e-280 968.0 645 76.6
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 1.5e-278 962.6 676 71.7
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 2.0e-278 962.2 645 75.5
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 3.4e-278 961.4 645 75.0
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 4.4e-278 961.1 645 73.8
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 1.4e-276 956.1 645 73.2
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 5.4e-276 954.1 646 72.8
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 1.2e-275 953.0 645 72.4
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.5e-275 951.4 581 82.4
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.3e-274 949.5 646 72.6
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 2.1e-272 942.2 645 73.0
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 2.8e-272 941.8 637 75.5
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 2.8e-272 941.8 645 73.0
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 4.7e-272 941.0 645 71.6
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 6.2e-272 940.6 645 71.5
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 5.2e-271 937.6 647 72.8
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 2.6e-270 935.3 650 73.5
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.3e-269 932.9 646 71.4
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 6.4e-269 930.6 645 71.9
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 3.5e-267 924.9 644 71.3
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 4.6e-267 924.5 645 70.7
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 7.8e-267 923.7 646 71.4
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 5.1e-266 921.0 692 68.1
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.5e-265 919.5 646 70.7
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 1.6e-264 916.0 646 70.4
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 4.7e-264 914.4 646 70.6
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.4e-263 912.9 645 69.9
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 1.4e-263 912.9 649 69.6
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 1.8e-263 912.5 645 70.7
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 6.8e-263 910.6 645 70.2
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.4e-260 902.9 645 69.1
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 9.2e-260 900.2 645 70.1
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.6e-259 899.4 677 67.7
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 4.6e-259 897.9 645 70.1
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 1.2e-256 889.8 644 68.9
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 6.2e-256 887.5 662 67.5
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 8.1e-256 887.1 644 68.8
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 8.1e-256 887.1 583 75.5
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 1.4e-255 886.3 650 68.5
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 2.4e-255 885.6 645 69.3
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 7.6e-254 880.6 729 63.5
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 4.9e-253 877.9 645 66.2
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.9e-252 875.9 645 66.2
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 3.5e-251 871.7 645 67.8
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 7.8e-251 870.5 644 67.4
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 8.7e-250 867.1 645 67.4
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 7.3e-249 864.0 718 62.8
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.0e-247 857.1 646 71.4
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 1.2e-246 856.7 647 67.1
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 9.9e-246 853.6 679 63.5
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.7e-245 852.8 650 65.5
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 1.1e-244 850.1 646 65.0
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 1.4e-244 849.7 646 65.0
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 3.2e-244 848.6 646 64.4
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 7.8e-243 844.0 646 65.5
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 2.3e-242 842.4 646 64.2
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 4.8e-240 834.7 622 66.1
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 6.2e-240 834.3 650 64.0
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 4.5e-238 828.2 697 62.7
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 5.8e-238 827.8 701 60.6
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 9.9e-238 827.0 636 63.2
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 1.7e-237 826.2 646 63.0
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 1.7e-237 826.2 651 63.0
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 3.8e-237 825.1 623 66.0
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 7.1e-236 820.8 673 60.8
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 2.7e-235 818.9 645 63.6
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 6.7e-234 814.3 554 73.5
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 5.6e-233 811.2 647 63.7
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 6.2e-232 807.7 644 64.0
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 1.8e-231 806.2 574 69.9
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 3.4e-230 802.0 720 57.6
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.3e-229 800.0 684 61.4
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 7.1e-228 794.3 645 62.8
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 4.6e-227 791.6 555 70.8
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 4.6e-227 791.6 638 63.0
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 5.8e-222 774.6 646 60.8
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.0e-221 773.9 667 61.0
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 6.5e-221 771.2 672 59.5
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 2.8e-216 755.7 646 59.4
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.1e-215 753.8 646 59.1
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 6.5e-213 744.6 645 60.0
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 1.3e-208 730.3 516 71.9
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.3e-202 709.5 626 60.5
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 2.2e-192 676.4 650 56.8
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 5.2e-186 655.2 492 66.9
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.4e-185 652.1 596 57.0
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 1.1e-172 610.9 667 50.1
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 8.6e-165 584.7 651 49.2
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.7e-152 543.9 354 75.4
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 2.9e-144 516.5 683 44.4
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 3.2e-135 486.5 311 78.5
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 1.4e-130 471.1 561 48.1
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 1.0e-104 385.2 646 41.3
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 2.2e-96 357.5 357 53.2
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 6.9e-90 335.9 309 56.3
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 1.5e-79 301.6 647 33.1
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 5.2e-77 293.1 239 62.3
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.2e-68 265.4 332 45.8
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 2.7e-49 201.1 326 38.0
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 5.6e-47 193.4 155 56.8
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.5e-36 158.7 309 33.0
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 3.7e-35 154.1 632 27.1
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 6.4e-35 153.3 115 65.2
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 2.0e-28 131.7 170 43.5
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 2.7e-25 121.3 101 63.4
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 1.4e-21 109.0 109 51.4
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 6.4e-19 100.1 104 51.9
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 3.2e-18 97.8 79 58.2
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 4.2e-18 97.4 83 56.6
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 8.7e-16 89.7 50 82.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.5e-15 89.0 50 82.0
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.5e-15 88.2 67 58.2
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.3e-15 87.4 50 80.0
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.1e-14 85.1 80 52.5
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.8e-14 84.7 50 80.0
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.3e-11 75.9 47 68.1
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 6.4e-11 73.6 62 50.0
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 6.4e-11 73.6 62 50.0
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 1.4e-10 72.4 42 85.7
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 4.2e-10 70.9 45 68.9
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 9.3e-10 69.7 45 68.9
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 5.6e-07 60.5 33 81.8
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 2.8e-06 58.2 33 72.7


User provided reference genes

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