Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 3.9e-244 847.8 459 100.0
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 3.7e-202 708.4 462 86.8
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 1.6e-197 693.0 462 85.3
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 7.9e-181 637.5 461 80.0
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.9e-180 635.2 461 79.6
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.4e-179 631.7 461 78.7
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 7.4e-179 630.9 461 79.0
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 6.9e-177 624.4 461 78.5
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 5.2e-164 581.6 462 74.7
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 5.3e-161 571.6 460 72.2
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 5.0e-159 565.1 456 73.9
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 2.7e-157 559.3 461 72.9
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 6.1e-157 558.1 471 70.3
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 5.2e-156 555.1 446 72.9
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 5.2e-156 555.1 461 72.2
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 8.3e-154 547.7 459 70.2
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 2.4e-153 546.2 461 71.8
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.5e-150 537.0 469 69.7
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 5.5e-150 535.0 460 71.7
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 8.0e-149 531.2 458 69.9
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 8.3e-146 521.2 454 69.4
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 2.4e-145 519.6 460 68.9
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 3.1e-145 519.2 460 68.9
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 7.0e-145 518.1 456 68.6
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 6.1e-141 505.0 458 68.1
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 1.4e-140 503.8 465 65.8
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.7e-138 496.9 443 68.6
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 2.9e-138 496.1 463 67.0
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 8.3e-138 494.6 443 68.4
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 1.8e-137 493.4 458 67.0
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.2e-136 490.7 443 68.2
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 1.3e-135 487.3 457 63.7
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.7e-135 486.9 443 67.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 5.6e-134 481.9 496 59.3
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.2e-133 478.4 386 73.3
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 6.2e-133 478.4 457 63.9
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.0e-132 477.6 462 63.9
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.4e-132 477.2 458 65.3
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 5.8e-131 471.9 447 65.3
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 5.8e-131 471.9 385 73.2
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 7.5e-131 471.5 436 66.1
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 8.3e-130 468.0 447 65.1
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 1.9e-129 466.8 435 66.9
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 2.4e-129 466.5 457 63.2
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 9.2e-129 464.5 340 80.6
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 3.5e-128 462.6 445 65.2
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 4.6e-128 462.2 461 64.6
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 6.0e-128 461.8 433 67.2
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 6.6e-127 458.4 409 69.2
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.5e-126 457.2 430 66.3
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 2.5e-126 456.4 457 63.7
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 3.3e-126 456.1 463 62.6
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 3.1e-124 449.5 432 65.3
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 5.2e-124 448.7 458 60.5
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 2.0e-123 446.8 440 63.9
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 3.4e-123 446.0 449 62.4
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 3.4e-123 446.0 458 60.3
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 2.4e-121 439.9 434 64.3
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 4.6e-120 435.6 436 62.6
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 6.0e-120 435.3 452 58.0
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.3e-119 434.1 377 69.2
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 1.7e-119 433.7 433 64.4
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.0e-119 433.0 432 61.6
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 3.0e-119 433.0 433 63.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 1.1e-118 431.0 433 64.0
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.5e-118 430.6 453 62.5
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 4.3e-118 429.1 391 68.8
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 7.3e-118 428.3 432 65.5
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 2.8e-117 426.4 385 70.6
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-116 424.5 373 71.3
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 3.1e-116 422.9 459 61.9
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 2.6e-115 419.9 453 62.0
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.6e-115 419.9 383 69.5
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 5.8e-115 418.7 383 68.4
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 9.9e-115 417.9 443 60.9
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 9.9e-115 417.9 367 72.2
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 2.9e-114 416.4 371 72.0
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 1.9e-113 413.7 410 66.1
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 2.4e-113 413.3 368 72.0
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 4.1e-113 412.5 384 69.0
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 7.1e-113 411.8 372 71.8
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 7.1e-113 411.8 372 71.8
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 9.2e-113 411.4 384 68.5
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 9.2e-113 411.4 384 68.5
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.6e-112 410.6 333 75.1
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 2.3e-111 406.8 461 57.9
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.1e-108 397.9 391 65.7
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 1.8e-108 397.1 401 62.1
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 5.2e-108 395.6 391 66.5
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 4.4e-107 392.5 416 61.5
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 4.4e-107 392.5 300 70.0
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 8.4e-106 388.3 418 62.0
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 6.0e-104 382.1 382 63.9
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 5.1e-103 379.0 259 79.5
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 2.8e-101 373.2 324 70.4
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 3.1e-100 369.8 376 63.6
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 2.0e-99 367.1 323 71.2
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 3.8e-98 362.8 323 68.4
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 6.4e-98 362.1 448 54.9
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 4.3e-94 349.4 415 57.3
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 1.3e-93 347.8 403 59.3
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.4e-89 334.3 251 70.9
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.9e-87 326.2 303 70.0
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.1e-84 318.2 228 76.8
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.8e-77 293.5 203 76.8
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.1e-73 281.6 275 67.6
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 7.2e-73 278.9 346 55.8
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 6.1e-72 275.8 448 42.4
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.9e-65 254.2 324 53.7
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 3.4e-59 233.4 238 66.8
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.4e-57 228.0 363 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 2.0e-54 217.6 305 49.2
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.4e-54 216.5 307 52.4
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.7e-53 214.5 237 48.5
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 9.1e-52 208.8 134 82.1
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.3e-50 204.9 225 50.2
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 4.7e-40 169.9 125 72.0
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.5e-38 164.9 249 40.6
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.2e-35 155.2 112 67.9
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 4.5e-35 153.3 210 42.9
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.2e-30 138.7 77 93.5
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.1e-25 122.1 157 56.1
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 7.8e-19 99.4 60 81.7
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.0e-10 72.4 101 47.5
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 8.1e-08 62.8 168 29.8


User provided reference genes

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