Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 1.1e-104 383.3 188 100.0
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 3.4e-98 361.7 187 93.6
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 2.9e-97 358.6 188 92.0
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 5.5e-96 354.4 188 91.0
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 1.2e-95 353.2 188 91.0
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.1e-95 352.4 188 90.4
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.6e-95 351.7 188 90.4
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 6.1e-95 350.9 188 89.4
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 7.9e-95 350.5 188 88.8
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 7.9e-95 350.5 189 89.9
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 1.0e-94 350.1 188 88.8
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.1e-93 346.7 188 87.2
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 1.5e-93 346.3 188 88.3
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 7.4e-93 344.0 189 87.3
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 7.4e-93 344.0 189 88.9
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 7.4e-93 344.0 188 86.7
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 9.7e-93 343.6 188 86.2
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 9.7e-93 343.6 187 87.2
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 2.2e-92 342.4 193 87.6
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 2.8e-92 342.0 189 86.8
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 3.7e-92 341.7 189 86.8
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 8.2e-92 340.5 189 86.2
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 1.1e-91 340.1 188 85.6
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 1.1e-91 340.1 189 86.8
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 2.4e-91 339.0 188 85.1
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 2.4e-91 339.0 188 85.1
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 2.4e-91 339.0 189 87.8
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 5.3e-91 337.8 192 88.0
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 9.1e-91 337.0 189 86.2
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 9.1e-91 337.0 188 85.1
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 1.2e-90 336.7 191 86.4
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.2e-90 336.7 189 86.2
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 1.5e-90 336.3 193 86.0
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 2.6e-90 335.5 189 84.1
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 5.9e-90 334.3 188 84.6
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 5.9e-90 334.3 188 86.7
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 5.9e-90 334.3 190 86.8
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.0e-89 333.6 189 85.2
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 1.0e-89 333.6 191 85.9
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 1.3e-89 333.2 191 84.8
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 1.3e-89 333.2 188 85.6
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 1.7e-89 332.8 191 84.8
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 1.7e-89 332.8 191 84.3
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 1.7e-89 332.8 191 85.3
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 2.9e-89 332.0 191 85.3
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 3.8e-89 331.6 188 86.7
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 6.5e-89 330.9 193 84.5
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.1e-88 330.1 189 83.6
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 1.1e-88 330.1 189 84.7
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 1.1e-88 330.1 189 83.6
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 1.4e-88 329.7 189 85.2
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 3.2e-88 328.6 189 82.5
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 4.2e-88 328.2 192 83.9
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 5.5e-88 327.8 192 83.9
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 5.5e-88 327.8 189 83.1
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 5.5e-88 327.8 189 82.5
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 7.2e-88 327.4 192 84.9
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 7.2e-88 327.4 189 83.1
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 7.2e-88 327.4 189 83.6
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 7.2e-88 327.4 190 83.2
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 1.2e-87 326.6 191 84.3
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 1.6e-87 326.2 189 83.1
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 1.6e-87 326.2 192 83.3
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 2.7e-87 325.5 192 81.2
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 3.6e-87 325.1 189 82.5
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 4.7e-87 324.7 189 82.5
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 4.7e-87 324.7 189 82.5
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 6.1e-87 324.3 190 80.5
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 7.9e-87 323.9 189 82.5
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.3e-86 322.4 189 82.0
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 6.7e-86 320.9 191 82.7
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 6.7e-86 320.9 191 83.2
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.5e-85 319.7 190 78.4
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 1.5e-85 319.7 191 82.2
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 1.5e-85 319.7 191 82.2
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 1.5e-85 319.7 191 82.2
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 1.5e-85 319.7 188 84.6
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 2.0e-85 319.3 189 79.9
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 2.6e-85 318.9 191 81.7
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 2.6e-85 318.9 191 81.7
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 2.6e-85 318.9 189 82.0
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 3.3e-85 318.5 189 79.9
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 3.3e-85 318.5 189 80.4
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 4.4e-85 318.2 189 79.9
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 5.7e-85 317.8 191 81.7
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 7.4e-85 317.4 190 78.9
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 9.7e-85 317.0 191 80.6
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 9.7e-85 317.0 194 80.4
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 1.7e-84 316.2 188 81.4
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 2.2e-84 315.8 191 80.1
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 2.2e-84 315.8 191 80.1
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 2.8e-84 315.5 184 82.1
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 4.8e-84 314.7 191 81.2
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 6.3e-84 314.3 191 80.1
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 8.2e-84 313.9 191 79.6
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 1.1e-83 313.5 191 79.6
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 2.4e-83 312.4 188 79.8
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 7.0e-83 310.8 191 79.1
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 7.0e-83 310.8 188 79.3
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 9.1e-83 310.5 188 79.8
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 9.1e-83 310.5 191 80.1
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.2e-82 310.1 191 78.5
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 2.0e-82 309.3 178 84.3
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 3.5e-82 308.5 189 77.8
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 1.0e-81 307.0 188 79.3
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 2.2e-81 305.8 192 78.1
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 5.2e-70 268.1 145 90.3
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 5.2e-70 268.1 181 75.1
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 4.4e-69 265.0 191 68.6
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 7.5e-69 264.2 186 65.1
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 2.2e-68 262.7 156 79.5
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 2.7e-66 255.8 158 79.1
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 3.8e-65 251.9 189 65.1
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.2e-64 248.8 190 63.2
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.5e-61 240.0 147 79.6
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.4e-61 238.8 190 61.6
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.1e-55 219.5 183 55.2
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.8e-55 219.2 190 53.2
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.8e-54 216.5 183 54.6
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 3.0e-54 215.7 149 71.1
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 4.9e-52 208.4 189 57.1
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.0e-49 200.7 186 53.2
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 2.3e-49 199.5 181 54.7
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 3.4e-45 185.7 182 56.6
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 1.2e-42 177.2 189 54.5
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 3.5e-42 175.6 188 52.1
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 2.6e-37 159.5 94 81.9
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 3.4e-37 159.1 91 85.7
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 1.2e-29 134.0 79 83.5
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 6.0e-26 121.7 183 37.7
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 1.7e-25 120.2 182 34.6
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 1.5e-21 107.1 51 94.1
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 7.6e-13 78.2 163 32.5
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 4.3e-08 62.4 31 87.1
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 4.8e-07 58.9 28 85.7


User provided reference genes

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