Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 5.9e-138 494.2 250 100.0
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 7.8e-106 387.5 253 79.1
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.8e-94 349.7 253 71.9
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 7.6e-93 344.4 255 71.4
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 3.5e-90 335.5 255 71.0
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.5e-88 329.3 254 68.1
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 4.3e-88 328.6 253 69.6
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.2e-86 321.6 247 66.8
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 6.9e-86 321.2 244 66.4
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 5.4e-83 311.6 236 68.6
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 6.0e-82 308.1 243 65.8
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 6.0e-82 308.1 245 64.5
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.1e-80 303.9 284 60.2
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.6e-79 300.1 244 63.5
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.4e-78 296.2 240 64.2
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.2e-77 293.9 207 70.5
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.5e-77 293.5 245 64.5
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.9e-76 289.3 238 64.7
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 4.9e-76 288.5 213 69.0
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.9e-75 286.6 245 61.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.4e-75 286.2 249 59.8
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 9.3e-75 284.3 216 65.3
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.2e-74 283.9 214 67.8
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 6.0e-74 281.6 247 60.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 6.7e-73 278.1 241 61.4
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 2.1e-71 273.1 242 60.3
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 2.8e-71 272.7 240 57.9
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 4.8e-71 271.9 237 61.2
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 6.2e-71 271.6 243 61.7
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 8.1e-71 271.2 190 68.9
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 8.1e-71 271.2 244 56.6
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.1e-70 270.8 240 59.2
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.1e-70 270.8 243 60.1
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.1e-70 270.8 243 58.4
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.4e-70 269.6 243 60.1
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.1e-70 269.2 243 58.4
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.0e-70 268.9 243 60.1
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 6.9e-70 268.1 237 59.5
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 6.9e-70 268.1 242 58.3
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 9.0e-70 267.7 250 56.8
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.2e-69 267.3 241 60.2
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.5e-69 266.9 239 58.2
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.5e-69 266.9 259 57.1
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 2.0e-69 266.5 250 58.4
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.6e-69 266.2 223 61.4
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 2.6e-69 266.2 240 60.8
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 5.8e-69 265.0 240 58.8
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 7.6e-69 264.6 240 56.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 7.6e-69 264.6 240 59.2
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 9.9e-69 264.2 241 56.8
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 9.9e-69 264.2 241 56.8
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.3e-68 263.8 244 56.6
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.3e-68 263.8 257 58.0
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.2e-68 263.1 182 73.6
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 2.9e-68 262.7 243 56.8
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.8e-68 262.3 244 55.3
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.8e-68 262.3 252 55.2
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 3.8e-68 262.3 240 57.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 4.9e-68 261.9 241 59.3
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.4e-68 261.2 237 57.8
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.4e-67 260.4 240 56.7
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 4.2e-67 258.8 236 58.1
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.2e-67 258.8 248 56.5
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 5.5e-67 258.5 245 55.5
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 5.5e-67 258.5 216 62.5
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 7.1e-67 258.1 240 56.2
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 9.3e-67 257.7 220 58.6
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.6e-66 256.9 243 58.0
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.1e-66 256.5 241 56.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 2.7e-66 256.1 248 55.6
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.5e-66 255.8 194 64.4
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.5e-66 255.8 194 64.4
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.5e-66 255.8 244 56.1
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 4.6e-66 255.4 192 66.7
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 4.6e-66 255.4 242 56.6
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 6.0e-66 255.0 243 56.8
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.0e-66 255.0 248 56.9
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 6.0e-66 255.0 210 60.0
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 6.0e-66 255.0 251 59.0
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 7.9e-66 254.6 209 60.8
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.0e-65 254.2 197 64.0
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.0e-65 254.2 276 52.5
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.0e-65 252.7 241 59.3
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 3.0e-65 252.7 221 57.5
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 3.0e-65 252.7 207 63.8
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 5.1e-65 251.9 197 63.5
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.1e-65 251.9 197 63.5
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.1e-65 251.9 197 63.5
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 6.7e-65 251.5 182 68.7
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.5e-64 250.4 189 64.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 5.6e-64 248.4 230 57.4
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 7.4e-64 248.1 244 58.6
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 9.6e-64 247.7 215 59.1
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.6e-63 246.9 215 60.5
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 2.1e-63 246.5 195 64.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 4.8e-63 245.4 186 66.7
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-62 243.0 252 53.2
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.9e-60 236.1 246 53.7
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 3.8e-60 235.7 217 57.1
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 2.1e-58 229.9 154 76.0
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 2.7e-58 229.6 242 51.2
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 8.7e-57 224.6 154 72.1
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.1e-56 224.2 156 70.5
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.9e-56 223.4 144 75.7
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.9e-56 223.4 198 55.6
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 2.5e-56 223.0 154 70.8
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.4e-56 221.5 204 55.4
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.3e-55 220.7 155 71.6
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-55 220.3 165 69.1
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.8e-55 218.8 151 72.8
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.3e-55 218.4 162 69.8
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.1e-54 217.6 240 50.8
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.4e-54 216.5 239 51.5
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.4e-54 216.5 152 69.7
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.9e-54 214.9 151 72.8
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 9.0e-54 214.5 207 55.6
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 9.0e-54 214.5 237 50.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 5.9e-53 211.8 222 51.4
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.0e-52 211.1 145 71.0
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.9e-52 209.5 204 52.9
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.5e-51 206.5 200 58.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.8e-49 200.3 130 75.4
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.3e-49 199.9 203 57.1
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 5.1e-49 198.7 152 63.8
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.3e-48 196.1 164 60.4
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 5.7e-48 195.3 190 53.7
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 6.9e-46 188.3 261 45.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.6e-45 186.4 201 52.2
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 5.9e-45 185.3 245 45.3
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.0e-44 184.5 177 53.1
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.9e-44 183.0 149 63.1
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 3.2e-43 179.5 170 53.5
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.2e-42 177.6 200 54.5
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.1e-41 172.2 153 53.6
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 5.1e-41 172.2 143 55.9
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.8e-38 163.7 146 52.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 2.6e-37 159.8 173 53.2
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 5.9e-37 158.7 247 44.1
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.9e-35 153.7 245 40.0
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.2e-35 152.5 214 38.8
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.6e-34 150.6 156 56.4
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.8e-33 144.8 173 50.9
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 4.1e-30 136.0 168 50.6
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.9e-27 127.1 127 55.1
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.5e-19 99.0 83 56.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 9.8e-16 88.2 146 36.3
FAN08G1603 Fragaria x ananassa HOM05D004693 ORTHO05D005545 8.3e-15 85.1 92 51.1
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 8.3e-15 85.1 148 34.5
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.0e-13 80.5 134 34.3
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.3e-12 77.0 118 36.4
FAN04G3248 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.9e-12 76.6 86 47.7
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.5e-11 73.6 157 28.7
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.2e-11 72.8 81 40.7
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.2e-10 71.2 83 50.6
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 2.1e-10 70.5 88 43.2
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.5e-08 64.3 84 44.0
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.0e-08 63.9 68 38.2
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 5.7e-08 62.4 112 30.4
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.5e-08 62.0 164 29.9
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 6.3e-07 58.9 119 37.0


User provided reference genes

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