Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 9.7e-86 320.1 159 100.0
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 1.7e-74 282.7 160 87.5
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 3.2e-73 278.5 157 86.0
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.4e-71 273.1 158 84.8
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 2.6e-70 268.9 158 82.9
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 5.7e-70 267.7 157 80.9
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 1.7e-69 266.2 157 80.3
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 4.8e-69 264.6 155 81.9
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 5.4e-68 261.2 157 82.2
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 9.1e-68 260.4 151 84.1
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 5.9e-67 257.7 157 79.0
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 3.8e-66 255.0 155 78.7
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 5.0e-66 254.6 154 79.9
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 4.2e-65 251.5 155 76.8
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 9.4e-65 250.4 158 77.2
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 4.0e-63 245.0 157 73.2
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 6.8e-63 244.2 156 75.0
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 8.8e-63 243.8 154 77.3
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 8.8e-63 243.8 157 72.0
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 1.2e-62 243.4 154 74.7
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.2e-62 243.4 157 77.1
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 1.2e-62 243.4 156 75.0
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 1.5e-62 243.0 155 74.2
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 3.4e-62 241.9 154 74.7
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 4.4e-62 241.5 157 72.6
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 4.4e-62 241.5 156 75.6
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 7.5e-62 240.7 155 72.3
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 9.8e-62 240.4 154 75.3
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 1.3e-61 240.0 156 74.4
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.3e-61 240.0 150 76.0
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 1.7e-61 239.6 155 72.9
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.7e-61 239.6 150 76.0
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 2.2e-61 239.2 157 72.0
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 2.2e-61 239.2 155 72.9
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 3.7e-61 238.4 172 68.6
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 6.3e-61 237.7 155 71.6
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 8.3e-61 237.3 156 75.6
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 1.1e-60 236.9 152 75.0
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 1.4e-60 236.5 155 71.6
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 3.1e-60 235.3 157 70.7
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 4.1e-60 235.0 157 70.7
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 4.1e-60 235.0 150 76.0
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 7.0e-60 234.2 157 68.8
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 9.1e-60 233.8 157 72.0
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 9.1e-60 233.8 154 73.4
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 2.7e-59 232.3 157 70.7
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 2.7e-59 232.3 150 74.7
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 2.7e-59 232.3 155 73.5
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 5.9e-59 231.1 150 74.0
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 7.7e-59 230.7 157 74.5
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 1.3e-58 229.9 150 74.7
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 1.3e-58 229.9 150 74.7
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 2.3e-58 229.2 153 70.6
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 6.6e-58 227.6 158 70.9
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 6.6e-58 227.6 152 72.4
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 6.6e-58 227.6 157 73.9
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 8.6e-58 227.3 158 70.3
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 1.1e-57 226.9 155 69.0
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 1.1e-57 226.9 155 72.9
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 1.1e-57 226.9 159 71.1
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 1.5e-57 226.5 161 67.7
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 1.5e-57 226.5 161 67.7
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 1.5e-57 226.5 151 72.2
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 2.5e-57 225.7 157 72.0
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 3.3e-57 225.3 157 73.2
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 4.2e-57 224.9 154 69.5
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 7.2e-57 224.2 155 65.8
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 1.2e-56 223.4 154 70.8
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 1.2e-56 223.4 157 72.0
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 2.1e-56 222.6 157 72.6
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 3.6e-56 221.9 161 67.7
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 4.7e-56 221.5 159 65.4
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 6.1e-56 221.1 165 65.5
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 1.4e-55 219.9 154 70.1
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 1.4e-55 219.9 155 67.7
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 2.3e-55 219.2 155 67.7
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 3.0e-55 218.8 135 75.6
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 1.5e-54 216.5 151 65.6
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 2.0e-54 216.1 154 67.5
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 2.6e-54 215.7 150 68.0
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 2.6e-54 215.7 157 69.4
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 2.6e-54 215.7 150 67.3
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 3.4e-54 215.3 149 66.4
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 5.7e-54 214.5 153 67.3
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 1.3e-53 213.4 153 67.3
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.7e-53 213.0 153 66.7
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 6.3e-53 211.1 150 64.7
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 5.9e-51 204.5 153 64.7
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 7.8e-51 204.1 154 65.6
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 3.9e-50 201.8 181 60.8
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 1.5e-49 199.9 143 67.8
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.2e-46 190.3 152 58.6
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 2.0e-46 189.5 134 68.7
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 3.4e-46 188.7 151 58.9
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 4.1e-44 181.8 151 57.6
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.6e-43 179.9 134 61.9
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 3.9e-42 175.3 151 57.0
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 1.5e-38 163.3 99 77.8
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.7e-37 159.8 108 71.3
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 6.4e-37 157.9 106 71.7
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 8.3e-37 157.5 150 54.0
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 3.2e-36 155.6 164 48.2
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 3.0e-34 149.1 94 76.6
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 2.1e-32 142.9 147 49.7
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 2.0e-30 136.3 90 70.0
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 4.1e-28 128.6 77 77.9
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 4.1e-28 128.6 81 77.8
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 4.1e-28 128.6 81 77.8
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.5e-27 125.6 80 72.5
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 5.6e-25 118.2 81 74.1
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 5.8e-22 108.2 81 67.9
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 7.6e-22 107.8 78 67.9
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 1.0e-18 97.4 67 70.1
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 2.5e-17 92.8 70 65.7
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 4.0e-15 85.5 97 44.3
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.7e-11 72.8 54 57.4
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 1.9e-09 66.6 123 34.1
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 1.9e-09 66.6 78 50.0


User provided reference genes

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