Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G153300 Prunus persica HOM05D001521 ORTHO05D001342 1.0e-87 326.6 160 100.0
Prupe.3G153100 Prunus persica HOM05D001521 ORTHO05D001342 4.4e-86 321.2 160 98.1
Prupe.5G237200 Prunus persica HOM05D001521 ORTHO05D001342 5.4e-52 208.0 160 63.8
Prupe.3G153600 Prunus persica HOM05D001521 ORTHO05D001342 3.2e-44 182.2 161 59.0
CsaV3_6G006750 Cucumis sativus L. HOM05D001521 ORTHO05D001342 9.6e-17 90.9 148 35.8
Sed0028148 Sechium edule HOM05D001521 ORTHO05D001342 2.1e-16 89.7 123 38.2
Sed0003936 Sechium edule HOM05D001521 ORTHO05D001342 3.7e-16 89.0 123 37.4
MELO3C022450.2 Cucumis melo HOM05D001521 ORTHO05D001342 1.8e-15 86.7 125 39.2
Sed0017234 Sechium edule HOM05D001521 ORTHO05D001342 1.8e-15 86.7 123 35.8
ClCG06G000900 Citrullus lanatus HOM05D001521 ORTHO05D001342 4.0e-15 85.5 123 37.4
Lj1P1067T12 Lonicera japonica HOM05D001521 ORTHO05D001342 4.0e-15 85.5 143 33.6
Lj1C599T6 Lonicera japonica HOM05D001521 ORTHO05D001342 6.9e-15 84.7 121 38.8
Cpa.g.sc1831.1 Carica papaya HOM05D001521 ORTHO05D001342 1.5e-14 83.6 146 34.9
Lj1C599T5 Lonicera japonica HOM05D001521 ORTHO05D001342 1.5e-14 83.6 121 38.0
Sed0023613 Sechium edule HOM05D001521 ORTHO05D001342 2.0e-14 83.2 123 37.4
GSVIVG01028618001 Vitis vinifera HOM05D001521 ORTHO05D001342 2.6e-14 82.8 124 38.7
FAN08G2871 Fragaria x ananassa HOM05D000011 ORTHO05D002639 5.8e-14 81.6 119 38.7
Hma1.2p1_0033F.1_g020970 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 5.8e-14 81.6 122 40.2
FAN08G1748 Fragaria x ananassa HOM05D001521 ORTHO05D001342 7.6e-14 81.3 119 38.7
FAN08G2683 Fragaria x ananassa HOM05D001521 ORTHO05D001342 7.6e-14 81.3 119 38.7
FAN08G3615 Fragaria x ananassa HOM05D001521 ORTHO05D001342 7.6e-14 81.3 119 38.7
Hma1.2p1_0033F.1_g020980 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 7.6e-14 81.3 122 40.2
TAR371G0196 Trochodendron aralioides HOM05D001521 ORTHO05D001342 7.6e-14 81.3 122 38.5
Dinv37718 Davidia involucrata HOM05D001521 ORTHO05D001342 1.0e-13 80.9 147 36.7
FAN08G1602 Fragaria x ananassa HOM05D000011 ORTHO05D002639 1.0e-13 80.9 119 38.7
FAN08G2489 Fragaria x ananassa HOM05D000011 ORTHO05D002639 1.3e-13 80.5 119 38.7
Lj6P274T9 Lonicera japonica HOM05D001521 ORTHO05D001342 1.3e-13 80.5 99 41.4
Sed0024914 Sechium edule HOM05D001521 ORTHO05D001342 1.3e-13 80.5 123 35.8
GSVIVG01028606001 Vitis vinifera HOM05D001521 ORTHO05D001342 1.3e-13 80.5 124 37.1
GSVIVG01028617001 Vitis vinifera HOM05D001521 ORTHO05D001342 1.3e-13 80.5 125 37.6
Ah.06g190240 Amaranthus hybridus HOM05D001521 ORTHO05D001342 1.7e-13 80.1 127 36.2
Lj1C599T0 Lonicera japonica HOM05D001521 ORTHO05D001342 1.7e-13 80.1 101 42.6
Hma1.2p1_0439F.1_g153190 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 2.9e-13 79.3 103 41.7
Rhsim01G0106900 Rhododendron simsii HOM05D000041 ORTHO05D000452 2.9e-13 79.3 123 38.2
CSS0010403 Camellia sinensis var. sinensis HOM05D001521 ORTHO05D001342 3.8e-13 79.0 123 38.2
ClCG06G001040 Citrullus lanatus HOM05D001521 ORTHO05D001342 4.9e-13 78.6 150 34.0
Oeu035081.1 Olea europaea HOM05D001521 ORTHO05D001342 4.9e-13 78.6 101 41.6
Prupe.2G097700 Prunus persica HOM05D001521 ORTHO05D001342 4.9e-13 78.6 145 35.9
Sc19g0001570 Simmondsia chinensis HOM05D001521 ORTHO05D001342 4.9e-13 78.6 123 34.1
Dinv12865 Davidia involucrata HOM05D001521 ORTHO05D001342 6.5e-13 78.2 122 39.3
Rhsim01G0107000 Rhododendron simsii HOM05D000041 ORTHO05D000061 6.5e-13 78.2 122 39.3
Rhsim08G0106700 Rhododendron simsii HOM05D000041 ORTHO05D000452 6.5e-13 78.2 122 39.3
Cpa.g.sc223.19 Carica papaya HOM05D001521 ORTHO05D001342 1.1e-12 77.4 142 33.8
AUR62011460 Chenopodium quinoa HOM05D001521 ORTHO05D001342 1.1e-12 77.4 117 36.8
Hma1.2p1_1715F.1_g299020 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 1.1e-12 77.4 105 37.1
Cpa.g.c44888 Carica papaya HOM05D001521 ORTHO05D001342 1.4e-12 77.0 122 34.4
Cpa.g.sc291.2 Carica papaya HOM05D001521 ORTHO05D001342 1.4e-12 77.0 122 34.4
TAR636G2451 Trochodendron aralioides HOM05D001521 ORTHO05D001342 1.9e-12 76.6 121 39.7
Cpa.g.sc264.8 Carica papaya HOM05D001521 ORTHO05D001342 3.2e-12 75.9 102 34.3
Sed0017368 Sechium edule HOM05D001521 ORTHO05D001342 3.2e-12 75.9 125 32.0
Sed0023711 Sechium edule HOM05D001521 ORTHO05D001342 4.2e-12 75.5 124 33.9
Cpa.g.sc264.7 Carica papaya HOM05D001521 ORTHO05D001342 5.5e-12 75.1 125 35.2
Sed0020102 Sechium edule HOM05D001521 ORTHO05D001342 1.2e-11 73.9 109 36.7
Hund15934 Selenicereus undatus HOM05D001521 ORTHO05D001342 1.2e-11 73.9 123 34.1
CSS0039569 Camellia sinensis var. sinensis HOM05D001521 ORTHO05D001342 1.6e-11 73.6 141 34.0
ClCG03G004470 Citrullus lanatus HOM05D001521 ORTHO05D001342 2.7e-11 72.8 126 33.3
Cpa.g.sc83.17 Carica papaya HOM05D001521 ORTHO05D001342 4.6e-11 72.0 121 33.9
Cpa.g.sc83.19 Carica papaya HOM05D001521 ORTHO05D001342 6.1e-11 71.6 121 33.9
CsaV3_6G006970 Cucumis sativus L. HOM05D001521 ORTHO05D001342 6.1e-11 71.6 119 32.8
Lj9A162T18 Lonicera japonica HOM05D001521 ORTHO05D001342 6.1e-11 71.6 117 36.8
Rhsim05G0009700 Rhododendron simsii HOM05D001521 ORTHO05D001342 6.1e-11 71.6 137 33.6
Cpa.g.sc567.1 Carica papaya HOM05D001521 ORTHO05D001342 7.9e-11 71.2 121 33.9
AUR62011446 Chenopodium quinoa HOM05D001521 ORTHO05D001342 7.9e-11 71.2 104 36.5
Cpa.g.sc125.2 Carica papaya HOM05D001521 ORTHO05D001342 1.0e-10 70.9 143 30.1
Cpa.g.sc83.14 Carica papaya HOM05D001521 ORTHO05D001342 1.0e-10 70.9 121 33.1
AUR62011447 Chenopodium quinoa HOM05D001521 ORTHO05D001342 1.3e-10 70.5 156 32.1
AUR62016615 Chenopodium quinoa HOM05D001521 ORTHO05D001342 1.3e-10 70.5 136 32.4
MELO3C022429.2 Cucumis melo HOM05D001521 ORTHO05D001342 1.3e-10 70.5 119 32.8
MD03G1201400 Malus domestica HOM05D001521 ORTHO05D001342 1.8e-10 70.1 125 35.2
ClCG06G001060 Citrullus lanatus HOM05D001521 ORTHO05D001342 2.3e-10 69.7 119 32.8
ClCG06G003010 Citrullus lanatus HOM05D001521 ORTHO05D001342 3.9e-10 68.9 124 32.3
ClCG06G003020 Citrullus lanatus HOM05D001521 ORTHO05D001342 3.9e-10 68.9 123 34.1
Rhsim05G0009900 Rhododendron simsii HOM05D001521 ORTHO05D001342 5.1e-10 68.6 126 35.7
CsaV3_6G006950 Cucumis sativus L. HOM05D001521 ORTHO05D001342 8.7e-10 67.8 127 33.9
TWI38G1624 Tripterygium wilfordii HOM05D001521 ORTHO05D001342 8.7e-10 67.8 108 32.4
MELO3C022430.2 Cucumis melo HOM05D001521 ORTHO05D001342 1.5e-09 67.0 122 36.1
CsaV3_6G006990 Cucumis sativus L. HOM05D001521 ORTHO05D001342 1.9e-09 66.6 119 31.1
Prupe.2G097800 Prunus persica HOM05D001521 ORTHO05D001342 2.5e-09 66.2 108 38.9
RcHm_v2.0_Chr1g0337031 Rosa chinensis HOM05D001521 ORTHO05D001342 2.5e-09 66.2 111 37.8
EL10Ac1g00528 Beta vulgaris HOM05D001521 ORTHO05D001342 3.3e-09 65.9 106 37.7
CsaV3_6G008850 Cucumis sativus L. HOM05D001521 ORTHO05D001342 3.3e-09 65.9 127 36.2
FAN13G2789 Fragaria x ananassa HOM05D001521 ORTHO05D001342 4.3e-09 65.5 138 34.1
FvH4_6g45591 Fragaria vesca HOM05D001521 ORTHO05D001342 5.7e-09 65.1 107 33.6
MD07G1171100 Malus domestica HOM05D001521 ORTHO05D001342 5.7e-09 65.1 111 36.9
MELO3C022255.2 Cucumis melo HOM05D001521 ORTHO05D001342 7.4e-09 64.7 148 31.1
MELO3C022434.2 Cucumis melo HOM05D001521 ORTHO05D001342 7.4e-09 64.7 105 37.1
EL10Ac6g13883 Beta vulgaris HOM05D001521 ORTHO05D001342 1.3e-08 63.9 69 43.5
EL10As2g23150 Beta vulgaris HOM05D001521 ORTHO05D001342 1.3e-08 63.9 102 39.2
FvH4_5g17710 Fragaria vesca HOM05D001521 ORTHO05D001342 1.6e-08 63.5 125 34.4
FAN18G4180 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.6e-08 63.5 125 34.4
Ah.06g190230 Amaranthus hybridus HOM05D001521 ORTHO05D001342 2.2e-08 63.2 102 34.3
CsaV3_6G006960 Cucumis sativus L. HOM05D001521 ORTHO05D001342 2.2e-08 63.2 147 28.6
FAN04G1773 Fragaria x ananassa HOM05D001521 ORTHO05D001342 2.2e-08 63.2 125 34.4
Dinv04994 Davidia involucrata HOM05D001521 ORTHO05D001342 2.8e-08 62.8 77 41.6
ClCG06G000920 Citrullus lanatus HOM05D001521 ORTHO05D001342 3.7e-08 62.4 134 27.6
MELO3C022431.2 Cucumis melo HOM05D001521 ORTHO05D001342 3.7e-08 62.4 105 30.5
MD01G1104300 Malus domestica HOM05D001521 ORTHO05D001342 3.7e-08 62.4 110 34.5
RcHm_v2.0_Chr2g0163691 Rosa chinensis HOM05D001521 ORTHO05D001342 3.7e-08 62.4 110 31.8
Sed0026868 Sechium edule HOM05D001521 ORTHO05D001342 4.8e-08 62.0 142 32.4
CsaV3_6G006920 Cucumis sativus L. HOM05D001521 ORTHO05D001342 8.2e-08 61.2 103 35.9
FvH4_6g45770 Fragaria vesca HOM05D001521 ORTHO05D001342 8.2e-08 61.2 123 30.9
Rhsim01G0221700 Rhododendron simsii HOM05D001521 ORTHO05D001342 8.2e-08 61.2 126 33.3
RcHm_v2.0_Chr2g0163661 Rosa chinensis HOM05D001521 ORTHO05D001342 8.2e-08 61.2 107 31.8
EL10Ac2g02860 Beta vulgaris HOM05D001521 ORTHO05D001342 1.1e-07 60.8 126 31.0
EL10Ac8g19842 Beta vulgaris HOM05D001521 ORTHO05D001342 1.4e-07 60.5 46 50.0
CsaV3_6G008840 Cucumis sativus L. HOM05D001521 ORTHO05D001342 1.4e-07 60.5 126 34.1
RcHm_v2.0_Chr2g0163631 Rosa chinensis HOM05D001521 ORTHO05D001342 1.4e-07 60.5 107 31.8
EL10Ac4g09242 Beta vulgaris HOM05D001521 ORTHO05D001342 1.8e-07 60.1 74 33.8
MELO3C021142.2 Cucumis melo HOM05D001521 ORTHO05D001342 1.8e-07 60.1 100 35.0
FAN14G0309 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.8e-07 60.1 138 29.0
CSS0049728 Camellia sinensis var. sinensis HOM05D001521 ORTHO05D001342 2.4e-07 59.7 97 38.1
RcHm_v2.0_Chr2g0163671 Rosa chinensis HOM05D001521 ORTHO05D001342 2.4e-07 59.7 98 32.7
FvH4_7g07080 Fragaria vesca HOM05D001521 ORTHO05D001342 3.1e-07 59.3 111 34.2
RcHm_v2.0_Chr2g0163741 Rosa chinensis HOM05D001521 ORTHO05D001342 3.1e-07 59.3 101 32.7
FAN09G4373 Fragaria x ananassa HOM05D001521 ORTHO05D001342 4.1e-07 58.9 103 34.0
MD02G1240200 Malus domestica HOM05D001521 ORTHO05D001342 4.1e-07 58.9 120 35.8
AUR62018482 Chenopodium quinoa HOM05D001521 ORTHO05D001342 5.3e-07 58.5 127 33.9
CsaV3_6G006980 Cucumis sativus L. HOM05D001521 ORTHO05D001342 9.0e-07 57.8 104 32.7
RcHm_v2.0_Chr2g0163571 Rosa chinensis HOM05D001521 ORTHO05D001342 9.0e-07 57.8 126 28.6
RcHm_v2.0_Chr2g0163591 Rosa chinensis HOM05D001521 ORTHO05D001342 9.0e-07 57.8 101 31.7
Ah.13g067960 Amaranthus hybridus HOM05D001521 ORTHO05D001342 1.2e-06 57.4 119 31.9
PSO339G3048 Papaver somniferum HOM05D001521 ORTHO05D001342 1.5e-06 57.0 125 34.4
Rhsim05G0011600 Rhododendron simsii HOM05D001521 ORTHO05D001342 2.0e-06 56.6 107 33.6
Dinv05622 Davidia involucrata HOM05D001521 ORTHO05D001342 2.6e-06 56.2 82 36.6
Dinv37733 Davidia involucrata HOM05D001521 ORTHO05D001342 2.6e-06 56.2 143 31.5
MELO3C000313.2 Cucumis melo HOM05D001521 ORTHO05D001342 3.4e-06 55.8 123 30.9
ClCG06G001050 Citrullus lanatus HOM05D001521 ORTHO05D001342 4.5e-06 55.5 123 30.1
Gohir.A02G009400 Gossypium hirsutum HOM05D001521 ORTHO05D001342 7.7e-06 54.7 129 28.7


User provided reference genes

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