Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.9e-167 592.0 346 100.0
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 8.8e-116 421.0 302 75.2
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.9e-87 326.2 286 63.6
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.1e-86 324.3 295 60.0
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.5e-86 323.9 300 61.7
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.8e-85 319.7 312 60.3
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.0e-84 317.8 293 62.5
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 8.9e-84 314.7 305 59.3
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 2.6e-83 313.2 287 63.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 4.9e-82 308.9 296 60.8
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 8.3e-82 308.1 290 60.0
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.7e-80 303.1 284 61.6
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 4.6e-80 302.4 306 56.2
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 8.6e-79 298.1 290 60.7
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 2.8e-77 293.1 294 58.5
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.8e-77 293.1 299 59.9
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.8e-77 293.1 298 58.1
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.3e-76 290.0 324 54.9
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.3e-76 290.0 324 54.9
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 3.1e-76 289.7 297 56.2
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 5.2e-76 288.9 298 58.1
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 6.8e-76 288.5 333 54.1
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.9e-73 280.4 294 57.5
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.2e-73 279.6 300 57.7
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 4.1e-73 279.3 289 56.4
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.6e-72 277.3 296 55.4
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.5e-72 276.2 294 55.1
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 4.6e-72 275.8 293 57.3
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.3e-71 273.5 301 54.2
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 3.9e-71 272.7 298 54.4
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.9e-71 272.7 292 56.8
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.6e-71 271.9 296 54.7
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.5e-70 270.8 296 55.7
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 5.6e-70 268.9 296 57.1
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 5.6e-70 268.9 297 55.6
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 9.5e-70 268.1 292 57.2
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 6.2e-69 265.4 299 55.5
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 6.2e-69 265.4 298 55.7
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.8e-68 263.8 292 54.5
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 5.2e-68 262.3 278 54.3
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 5.2e-68 262.3 291 54.6
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.0e-67 260.4 292 56.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.0e-67 260.4 219 65.3
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 7.5e-67 258.5 307 53.4
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.9e-66 256.5 297 53.9
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.9e-66 255.8 300 52.7
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.3e-66 255.0 297 54.2
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.9e-65 253.8 311 51.8
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.9e-65 253.8 292 53.8
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 3.2e-65 253.1 297 53.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.2e-65 253.1 297 53.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 5.4e-65 252.3 287 55.4
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 7.1e-65 251.9 297 53.5
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.7e-64 250.0 295 50.8
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.5e-64 249.6 297 53.2
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 3.5e-64 249.6 286 53.1
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 7.8e-64 248.4 294 52.0
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.0e-63 248.1 308 52.3
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.7e-63 247.3 283 53.0
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.7e-63 247.3 294 53.1
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.1e-63 245.7 299 54.2
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 5.1e-63 245.7 304 51.3
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 6.6e-63 245.4 342 46.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.5e-62 243.4 315 49.8
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.5e-62 243.4 263 57.0
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.5e-62 243.4 285 53.3
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.3e-62 243.0 314 51.0
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 4.3e-62 242.7 296 52.4
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 9.5e-62 241.5 292 51.0
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.6e-61 240.7 293 51.5
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.1e-61 240.4 302 50.7
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 8.1e-61 238.4 297 53.2
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.4e-60 236.9 296 52.4
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 6.8e-60 235.3 288 52.1
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.2e-59 234.6 295 52.5
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.5e-59 234.2 283 51.6
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 4.4e-59 232.6 294 48.6
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 4.4e-59 232.6 294 48.6
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 5.8e-59 232.3 301 52.2
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 5.8e-59 232.3 303 50.8
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.7e-58 230.7 275 54.2
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.2e-58 230.3 223 58.7
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 2.2e-58 230.3 291 51.5
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.2e-58 230.3 295 52.9
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.8e-58 229.6 223 58.7
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 4.9e-58 229.2 294 51.7
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 6.4e-58 228.8 293 50.5
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.4e-58 228.8 286 50.7
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 8.4e-58 228.4 287 50.9
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 8.4e-58 228.4 311 48.2
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.4e-57 227.6 223 58.3
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.9e-57 227.3 294 51.4
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.4e-57 226.9 294 50.0
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 2.4e-57 226.9 295 49.8
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 5.4e-57 225.7 296 51.0
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 9.2e-57 224.9 286 49.3
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 9.2e-57 224.9 297 49.5
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.6e-56 224.2 295 49.5
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.5e-56 223.0 293 49.5
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.5e-56 223.0 301 49.8
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 3.5e-56 223.0 308 48.4
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 4.6e-56 222.6 206 60.2
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 6.0e-56 222.2 302 48.7
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 7.8e-56 221.9 306 48.0
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 1.0e-55 221.5 297 49.8
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.3e-55 221.1 306 48.0
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.3e-55 221.1 302 48.7
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.7e-55 220.7 287 50.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.7e-55 220.7 297 51.5
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.3e-55 220.3 271 50.2
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 6.6e-55 218.8 297 49.5
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.1e-54 218.0 295 48.5
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.9e-54 217.2 164 70.7
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.9e-54 217.2 292 50.0
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.9e-54 217.2 294 49.3
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 2.5e-54 216.9 288 48.6
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.3e-54 216.1 300 48.7
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.2e-53 214.5 292 50.7
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 2.8e-53 213.4 160 69.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.6e-53 213.0 295 49.8
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 8.1e-53 211.8 294 48.0
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 1.8e-52 210.7 305 46.6
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.8e-52 210.7 296 47.6
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.5e-51 207.6 310 47.7
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 7.6e-51 205.3 290 46.2
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.7e-50 204.1 295 49.2
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 3.8e-50 203.0 297 47.1
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.4e-49 201.1 294 44.9
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 5.4e-49 199.1 298 44.0
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 9.3e-49 198.4 269 46.8
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.7e-48 196.8 168 64.3
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.5e-48 196.4 122 78.7
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.9e-47 193.0 304 44.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 3.9e-47 193.0 131 69.5
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 9.9e-43 178.3 294 43.5
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.7e-42 177.6 161 60.9
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.7e-42 177.6 290 44.8
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.4e-42 175.6 258 47.3
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 9.3e-41 171.8 185 51.9
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.5e-38 163.7 135 63.0
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 3.3e-38 163.3 303 41.9
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.5e-35 154.5 284 40.1
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.8e-34 149.8 119 60.5
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.8e-34 149.8 119 60.5
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 6.4e-34 149.1 244 43.9
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-33 148.3 281 38.8
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.2e-33 146.7 132 57.6
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 6.0e-32 142.5 180 47.2
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 6.0e-32 142.5 195 47.2
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 6.7e-31 139.0 132 56.1
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.6e-24 117.9 208 37.0
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.8e-21 106.3 76 68.4
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 6.9e-20 102.4 174 40.8
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.7e-13 80.1 105 46.7
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 3.7e-13 80.1 123 43.1
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 4.1e-12 76.6 152 44.7
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 5.3e-12 76.3 57 59.6
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 5.3e-12 76.3 163 45.4
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 8.8e-07 58.9 132 37.1
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 9.7e-06 55.5 101 44.6


User provided reference genes

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