Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 1.8e-139 499.2 244 100.0
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.5e-122 443.0 242 86.4
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.5e-122 443.0 242 87.2
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.5e-122 443.0 242 87.2
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.6e-122 440.7 242 86.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 9.9e-122 440.3 242 86.0
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.7e-121 439.5 242 86.4
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.5e-109 399.8 245 79.2
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 2.8e-108 395.6 245 78.0
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 1.5e-106 389.8 246 76.0
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 2.9e-105 385.6 242 77.7
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 8.4e-105 384.0 242 76.9
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.4e-104 383.3 248 75.4
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.9e-104 382.9 248 74.2
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 1.9e-104 382.9 248 74.2
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 3.2e-104 382.1 241 75.9
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 5.4e-104 381.3 249 72.7
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 9.3e-104 380.6 240 77.5
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 9.3e-104 380.6 248 73.4
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 1.2e-103 380.2 249 73.5
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 1.2e-103 380.2 248 73.4
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 4.6e-103 378.3 242 76.4
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 4.6e-103 378.3 242 76.0
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 7.9e-103 377.5 248 73.8
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.0e-102 377.1 248 72.6
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 1.8e-102 376.3 243 75.3
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 5.1e-102 374.8 248 72.2
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 1.5e-101 373.2 245 75.1
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.5e-101 373.2 248 73.8
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.9e-101 372.9 245 73.1
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 3.3e-101 372.1 247 72.9
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 3.3e-101 372.1 245 75.1
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 9.6e-101 370.5 245 72.2
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.8e-100 369.0 246 72.0
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 9.0e-99 364.0 247 72.1
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 2.0e-98 362.8 246 70.3
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 3.4e-98 362.1 237 73.4
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 7.6e-98 360.9 245 73.1
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 9.9e-98 360.5 249 69.9
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 1.3e-97 360.1 246 72.0
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 2.9e-97 359.0 204 84.8
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 6.4e-97 357.8 239 71.1
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 8.4e-97 357.5 247 69.6
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 9.3e-96 354.0 282 64.5
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 2.1e-95 352.8 238 71.0
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 3.5e-95 352.1 240 69.2
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 7.9e-95 350.9 243 69.5
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 3.0e-94 349.0 238 69.7
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 6.7e-94 347.8 240 68.3
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.5e-93 346.7 238 68.9
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.5e-93 346.7 242 69.0
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 4.3e-93 345.1 240 69.2
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.3e-92 343.6 246 67.5
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.6e-92 343.2 240 68.3
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 3.7e-92 342.0 238 68.9
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 3.7e-92 342.0 242 68.6
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 3.7e-92 342.0 242 67.4
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 6.2e-92 341.3 238 68.1
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 8.2e-92 340.9 238 68.5
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.1e-91 340.5 243 67.1
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 1.1e-91 340.5 242 66.9
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 1.1e-91 340.5 272 62.5
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 1.4e-91 340.1 243 67.5
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.8e-91 339.7 238 68.1
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 2.4e-91 339.3 245 65.7
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 3.1e-91 339.0 245 66.9
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 9.0e-91 337.4 242 69.8
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.2e-90 337.0 238 68.5
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.2e-90 337.0 242 69.4
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 2.6e-90 335.9 242 66.5
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 2.6e-90 335.9 238 67.2
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 4.5e-90 335.1 242 67.4
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 5.8e-90 334.7 227 70.0
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 5.8e-90 334.7 237 67.9
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.3e-89 333.6 237 67.5
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 2.9e-89 332.4 242 68.6
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 1.1e-88 330.5 243 65.8
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 1.1e-88 330.5 218 71.1
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 5.5e-88 328.2 252 64.7
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 5.5e-88 328.2 239 65.7
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 9.3e-88 327.4 246 65.9
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.2e-87 327.0 242 64.9
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 2.1e-87 326.2 244 70.1
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 2.1e-87 326.2 243 65.0
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.5e-87 325.5 205 75.6
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 2.5e-85 319.3 204 74.0
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 8.2e-84 314.3 216 71.3
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.0e-82 309.7 240 63.3
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 2.2e-81 306.2 198 72.2
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 3.8e-81 305.4 258 61.6
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 9.4e-80 300.8 190 77.9
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 9.4e-80 300.8 196 73.0
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 1.6e-79 300.1 243 63.0
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 2.7e-79 299.3 210 67.1
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 2.7e-79 299.3 210 68.1
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 6.7e-78 294.7 211 67.8
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.1e-77 293.9 180 77.8
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.5e-77 292.7 211 67.8
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 5.7e-77 291.6 211 67.3
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 5.7e-77 291.6 268 58.2
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 7.4e-77 291.2 211 67.3
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.4e-75 287.0 192 69.8
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 9.1e-75 284.3 236 61.0
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.3e-73 280.4 193 69.4
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 9.4e-72 274.2 241 53.1
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.2e-71 273.9 239 55.2
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 1.6e-71 273.5 234 61.1
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 2.7e-71 272.7 238 57.1
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.1e-71 271.6 239 53.6
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 1.4e-70 270.4 190 68.4
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.3e-70 269.6 245 51.4
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-67 260.8 240 51.2
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 2.0e-66 256.5 184 65.8
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 9.4e-64 247.7 167 68.9
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.6e-63 246.9 201 63.7
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 6.1e-63 245.0 233 51.5
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 3.3e-61 239.2 242 53.7
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.7e-60 236.9 165 67.3
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 4.8e-60 235.3 244 57.0
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 3.1e-59 232.6 196 62.2
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.7e-58 228.0 218 52.3
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.3e-57 227.3 173 64.7
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-57 226.9 268 44.8
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 3.0e-54 216.1 144 71.5
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 5.7e-53 211.8 166 65.1
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 5.7e-53 211.8 216 49.5
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 8.2e-52 208.0 226 51.8
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 7.0e-51 204.9 131 77.1
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.2e-50 204.1 172 61.0
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.0e-49 201.1 194 51.5
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 3.6e-47 192.6 188 53.7
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 2.3e-46 189.9 241 47.3
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 2.8e-44 183.0 112 77.7
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 3.1e-43 179.5 194 51.0
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 2.5e-40 169.9 227 40.5
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.8e-38 163.7 105 72.4
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 7.5e-37 158.3 108 72.2
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 6.3e-36 155.2 108 68.5
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.2e-34 151.0 106 64.2
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 5.0e-33 145.6 102 70.6
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 2.1e-31 140.2 215 41.9
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 8.9e-30 134.8 161 47.8
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 3.1e-22 109.8 99 53.5
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.3e-20 104.4 161 36.0
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.4e-19 100.1 72 65.3
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.3e-17 93.6 67 64.2
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 1.9e-16 90.5 65 67.7
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 8.9e-14 81.6 61 63.9
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.7e-12 77.4 72 54.2
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-11 74.7 87 42.5
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 1.9e-11 73.9 110 36.4
FAN14G1154 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.1e-07 60.5 65 52.3


User provided reference genes

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