Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 1.4e-117 426.4 224 100.0
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 2.4e-90 335.9 228 82.0
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 1.1e-87 327.0 228 80.7
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 7.3e-71 271.2 225 71.6
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.8e-69 266.5 226 71.2
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 3.4e-68 262.3 224 69.2
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 3.4e-68 262.3 224 69.2
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 7.1e-66 254.6 225 69.3
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 2.1e-65 253.1 226 69.0
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.6e-62 243.4 229 67.2
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 4.7e-62 241.9 230 65.7
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.1e-61 240.7 228 65.8
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.2e-60 237.3 212 66.0
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.2e-60 237.3 226 65.9
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 4.9e-59 231.9 224 64.7
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.9e-58 229.9 229 65.5
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 7.1e-58 228.0 228 64.0
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 9.2e-58 227.6 251 60.6
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 9.2e-58 227.6 251 60.2
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 1.0e-56 224.2 231 64.1
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 1.7e-56 223.4 235 63.8
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 9.6e-55 217.6 213 63.8
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.4e-53 213.8 225 60.9
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 2.6e-52 209.5 231 61.9
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 5.4e-50 201.8 245 55.5
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.6e-49 198.7 229 58.5
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 6.0e-49 198.4 212 61.3
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 7.8e-49 198.0 230 61.7
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.3e-48 197.2 214 60.7
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.6e-48 194.9 213 60.1
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.1e-46 188.0 229 54.1
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.1e-45 187.6 226 56.6
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 9.0e-45 184.5 228 53.9
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 3.4e-44 182.6 207 60.9
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.3e-43 180.6 233 56.2
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 2.2e-43 179.9 229 56.8
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 8.4e-43 177.9 230 53.5
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.9e-42 176.8 225 57.3
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.9e-42 176.8 241 53.9
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 9.3e-42 174.5 207 60.4
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 2.1e-41 173.3 239 54.4
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.1e-41 173.3 223 57.8
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.1e-41 173.3 229 56.8
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.1e-41 173.3 229 56.8
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.0e-40 171.0 229 52.8
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.7e-40 170.2 188 62.8
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.7e-40 170.2 229 55.0
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 3.9e-40 169.1 232 56.5
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 6.6e-40 168.3 232 52.2
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-39 167.5 209 54.1
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 1.1e-39 167.5 240 53.8
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.6e-39 165.2 209 53.6
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 1.8e-37 160.2 194 57.2
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.8e-37 160.2 234 50.9
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.8e-37 160.2 226 53.5
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 2.4e-37 159.8 220 54.1
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 4.0e-37 159.1 240 52.5
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 4.0e-37 159.1 218 50.9
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.9e-37 158.3 184 55.4
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 6.9e-37 158.3 184 56.5
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 1.5e-36 157.1 220 50.0
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.7e-35 153.7 237 50.2
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 8.4e-35 151.4 208 56.2
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 8.4e-35 151.4 224 49.6
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.4e-34 150.6 184 55.4
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 3.2e-34 149.4 217 52.1
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 5.5e-34 148.7 242 50.0
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.3e-34 147.9 229 53.7
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 9.3e-34 147.9 176 58.5
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 4.6e-33 145.6 182 54.4
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 3.9e-32 142.5 181 54.1
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.9e-32 142.5 208 51.4
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 5.1e-32 142.1 175 56.0
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.9e-31 140.2 234 47.9
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 3.3e-31 139.4 236 46.6
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.3e-30 137.5 211 49.8
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 1.6e-30 137.1 234 49.1
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.1e-30 136.7 282 40.4
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.4e-29 134.0 127 62.2
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 2.4e-29 133.3 236 47.9
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 2.4e-29 133.3 243 47.7
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 6.9e-29 131.7 243 44.4
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 4.5e-28 129.0 194 47.9
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.8e-28 128.6 163 57.7
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.0e-27 127.9 217 44.2
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.4e-26 124.0 245 42.9
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.5e-26 123.2 239 42.7
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.5e-26 123.2 185 48.6
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 5.5e-26 122.1 196 48.0
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.2e-25 120.9 242 41.7
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 2.7e-25 119.8 332 36.1
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 3.9e-24 115.9 154 53.9
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.9e-23 113.6 263 39.9
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.9e-23 113.6 241 40.7
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.9e-23 113.6 241 40.7
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.9e-23 113.6 239 40.6
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 4.3e-23 112.5 241 40.2
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 5.7e-23 112.1 244 41.4
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 5.7e-23 112.1 245 40.0
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 5.7e-23 112.1 123 61.0
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 7.4e-23 111.7 234 40.6
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 7.4e-23 111.7 252 40.1
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 9.6e-23 111.3 240 42.5
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 9.6e-23 111.3 200 46.0
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.6e-22 110.5 197 47.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.6e-22 110.5 191 47.1
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 2.8e-22 109.8 236 40.7
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.8e-22 109.8 253 38.3
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 3.7e-22 109.4 187 46.0
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 4.8e-22 109.0 248 37.5
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 8.2e-22 108.2 181 48.1
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.1e-21 107.8 243 39.9
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.1e-21 107.8 250 40.0
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.4e-21 107.5 188 45.7
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 5.3e-21 105.5 259 38.6
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 5.3e-21 105.5 248 37.9
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 9.0e-21 104.8 247 38.1
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 2.0e-20 103.6 130 55.4
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 2.6e-20 103.2 274 37.2
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.9e-19 99.8 259 36.7
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 8.5e-19 98.2 245 37.6
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.9e-18 97.1 226 42.5
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.9e-18 97.1 188 43.6
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 4.2e-18 95.9 233 39.1
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.2e-17 94.4 170 45.9
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 4.6e-17 92.4 219 41.1
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 6.1e-17 92.0 105 56.2
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.8e-16 90.5 242 36.8
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.8e-16 90.5 261 34.9
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 8.7e-16 88.2 243 37.4
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.9e-15 87.0 197 41.1
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.3e-14 84.3 319 31.0
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.6e-14 84.0 108 51.9
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 8.2e-14 81.6 247 36.8
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 9.0e-13 78.2 189 40.2
Gohir.A07G174000 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.2e-12 77.8 94 54.3
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.5e-12 77.4 201 35.8
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 3.4e-12 76.3 248 33.5
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.4e-12 76.3 299 30.1
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 4.5e-12 75.9 140 40.7
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 4.5e-12 75.9 159 40.9
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 7.7e-12 75.1 147 42.2
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.3e-11 74.3 191 38.2
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 2.2e-11 73.6 182 39.0
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.9e-10 70.5 224 34.8
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 2.1e-09 67.0 157 38.2
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 3.0e-08 63.2 87 50.6
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 3.9e-08 62.8 126 44.4
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 3.9e-08 62.8 126 44.4
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 6.7e-08 62.0 87 50.6
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 3.7e-06 56.2 149 38.3


User provided reference genes

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