Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 7.2e-30 133.3 68 100.0
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 4.5e-16 87.4 55 87.3
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.2e-13 79.3 47 85.1
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.2e-13 79.3 47 85.1
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.2e-13 79.3 47 85.1
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.6e-13 79.0 47 83.0
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 1.0e-12 76.3 50 78.0
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 1.0e-12 76.3 50 78.0
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 3.1e-09 64.7 53 62.3
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 5.4e-09 63.9 53 60.4
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 5.4e-09 63.9 52 61.5
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 1.2e-08 62.8 53 62.3
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 1.2e-08 62.8 48 64.6
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.2e-08 62.8 53 60.4
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 1.2e-08 62.8 53 60.4
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 1.2e-08 62.8 48 64.6
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 2.0e-08 62.0 53 62.3
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 2.7e-08 61.6 53 58.5
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 3.5e-08 61.2 53 60.4
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 4.5e-08 60.8 48 64.6
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 1.0e-07 59.7 52 59.6
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 1.0e-07 59.7 53 52.8
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 1.7e-07 58.9 52 59.6
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 1.7e-07 58.9 48 58.3
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 1.7e-07 58.9 53 56.6
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 1.7e-07 58.9 53 50.9
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 2.3e-07 58.5 52 59.6
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 2.3e-07 58.5 52 59.6
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 2.3e-07 58.5 61 47.5
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 2.3e-07 58.5 53 49.1
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 2.3e-07 58.5 47 61.7
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 2.9e-07 58.2 52 59.6
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 3.8e-07 57.8 52 61.5
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 5.0e-07 57.4 52 59.6
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 5.0e-07 57.4 53 47.2
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 5.0e-07 57.4 47 59.6
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 5.0e-07 57.4 51 58.8
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 6.6e-07 57.0 52 57.7
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 6.6e-07 57.0 53 58.5
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 8.6e-07 56.6 55 58.2
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 8.6e-07 56.6 53 52.8
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 8.6e-07 56.6 47 59.6
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 1.1e-06 56.2 46 60.9
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 1.5e-06 55.8 46 60.9
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 1.5e-06 55.8 50 60.0
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 1.5e-06 55.8 50 52.0
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 1.9e-06 55.5 51 56.9
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 1.9e-06 55.5 52 57.7
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 1.9e-06 55.5 53 56.6
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 2.5e-06 55.1 46 58.7
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 2.5e-06 55.1 46 58.7
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 2.5e-06 55.1 51 51.0
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 3.3e-06 54.7 52 57.7
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 3.3e-06 54.7 52 57.7
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 3.3e-06 54.7 52 57.7
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 3.3e-06 54.7 51 51.0
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 3.3e-06 54.7 55 47.3
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 4.2e-06 54.3 46 63.0
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 4.2e-06 54.3 46 63.0
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 4.2e-06 54.3 51 49.0
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 4.2e-06 54.3 47 59.6
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 5.5e-06 53.9 52 55.8
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 5.5e-06 53.9 53 47.2
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 5.5e-06 53.9 53 45.3
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 5.5e-06 53.9 50 54.0
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 7.2e-06 53.5 51 47.1
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 7.2e-06 53.5 46 58.7
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 7.2e-06 53.5 46 58.7
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 9.5e-06 53.1 47 59.6
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 9.5e-06 53.1 53 50.9


User provided reference genes

Program Settings